Aswendt_Lab/2024_Ruthe_SND @ 565a9fd3885afa9670a61bc637113df67cc23ebc

lucaruthe 565a9fd388 I added a folder with data from ImageJ		7 месяцев назад
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4Presentation	565a9fd388 I added a folder with data from ImageJ	7 месяцев назад
Nifti_Tract_density_registered	025bfd6626 perfored regaladin to get the tract desnity maps in the same orientaion and resolution of the MTPL or the iso_registered.nii.gz file	7 месяцев назад
Nifti_Trakte	e8e54e0207 current state: code is finished for representation	8 месяцев назад
Nifti_Trakte_V2	b1629b4c36 deleted some files	7 месяцев назад
Nifti_Trakte_registered	e8e54e0207 current state: code is finished for representation	8 месяцев назад
Nifti_Trakte_registered_v2	9a03b69e66 same as density masks also performed the regaladin here for the adjusted binary masks, this was the second version where the masks are dialated a littel bit	7 месяцев назад
Tract_Density	fa5effbbd2 I added a tract density folder	8 месяцев назад
figures	b1629b4c36 deleted some files	7 месяцев назад
C57BL6_mouse.iso_registerd.nii.gz	45782701c4 updated input and output	8 месяцев назад
README.md	a0f2377f45 I updated the READme file for Outputs	8 месяцев назад
affineTrafo.txt	45782701c4 updated input and output	8 месяцев назад

		
				README.md
			
				Outputs

Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
Nifti_Trakte_V2: These are the updated tracts (NV).
Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.