We use cookies to ensure you get the best experience on our website
Accueil Explorer Aide News
S'inscrire Connexion
Aswendt_Lab
/
2024_Ruthe_SND
8
0
Fork 0
Fichiers Tickets 0 Pull Requests 0 Wiki
Aborescence: 565a9fd388
Branches Tags
2024_Ruthe_SND
/
output
lucaruthe 565a9fd388 I added a folder with data from ImageJ il y a 7 mois
..
4Presentation 565a9fd388 I added a folder with data from ImageJ il y a 7 mois
Nifti_Tract_density_registered 025bfd6626 perfored regaladin to get the tract desnity maps in the same orientaion and resolution of the MTPL or the iso_registered.nii.gz file il y a 7 mois
Nifti_Trakte e8e54e0207 current state: code is finished for representation il y a 8 mois
Nifti_Trakte_V2 b1629b4c36 deleted some files il y a 7 mois
Nifti_Trakte_registered e8e54e0207 current state: code is finished for representation il y a 8 mois
Nifti_Trakte_registered_v2 9a03b69e66 same as density masks also performed the regaladin here for the adjusted binary masks, this was the second version where the masks are dialated a littel bit il y a 7 mois
Tract_Density fa5effbbd2 I added a tract density folder il y a 8 mois
figures b1629b4c36 deleted some files il y a 7 mois
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output il y a 8 mois
README.md a0f2377f45 I updated the READme file for Outputs il y a 8 mois
affineTrafo.txt 45782701c4 updated input and output il y a 8 mois

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.