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2024_Ruthe_SND
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output
arefks 0332ba78b3 imagJ 8 mesi fa
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4Presentation 565a9fd388 I added a folder with data from ImageJ 9 mesi fa
Final_Quantitative_output 71bbf47330 corrected bugs 8 mesi fa
ImagJ 0332ba78b3 imagJ 8 mesi fa
Tract_Density_Map 3a7f02f1c4 temp 8 mesi fa
Tract_Density_Map_registered 0332ba78b3 imagJ 8 mesi fa
Tract_Mask 3a7f02f1c4 temp 8 mesi fa
Tract_Mask_registered 0332ba78b3 imagJ 8 mesi fa
Tract_Mask_updated 3a7f02f1c4 temp 8 mesi fa
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function 8 mesi fa
del 2e7526154b I updated all tract masks and added the extrapyramidal tract masks as well as some variations of the CST and thalamocortical tracking. 8 mesi fa
figures b1629b4c36 deleted some files 9 mesi fa
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output 9 mesi fa
README.md a0f2377f45 I updated the READme file for Outputs 9 mesi fa
affineTrafo.txt 45782701c4 updated input and output 9 mesi fa

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.