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+
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+# FEAT version number
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+set fmri(version) 6.00
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+
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+# Are we in MELODIC?
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+set fmri(inmelodic) 0
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+
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+# Analysis level
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+# 1 : First-level analysis
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+# 2 : Higher-level analysis
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+set fmri(level) 2
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+
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+# Which stages to run
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+# 0 : No first-level analysis (registration and/or group stats only)
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+# 7 : Full first-level analysis
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+# 1 : Pre-processing
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+# 2 : Statistics
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+set fmri(analysis) 2
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+
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+# Use relative filenames
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+set fmri(relative_yn) 0
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+
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+# Balloon help
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+set fmri(help_yn) 0
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+
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+# Run Featwatcher
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+set fmri(featwatcher_yn) 0
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+
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+# Cleanup first-level standard-space images
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+set fmri(sscleanup_yn) 0
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+
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+# Output directory
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+set fmri(outputdir) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/2ndlvl_z164"
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+
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+# TR(s)
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+set fmri(tr) 3
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+
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+# Total volumes
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+set fmri(npts) 4
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+
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+# Delete volumes
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+set fmri(ndelete) 0
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+
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+# Perfusion tag/control order
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+set fmri(tagfirst) 1
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+
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+# Number of first-level analyses
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+set fmri(multiple) 4
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+
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+# Higher-level input type
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+# 1 : Inputs are lower-level FEAT directories
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+# 2 : Inputs are cope images from FEAT directories
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+set fmri(inputtype) 1
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+
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+# Carry out pre-stats processing?
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+set fmri(filtering_yn) 0
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+
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+# Brain/background threshold, %
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+set fmri(brain_thresh) 10
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+
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+# Critical z for design efficiency calculation
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+set fmri(critical_z) 5.3
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+
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+# Noise level
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+set fmri(noise) 0.66
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+
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+# Noise AR(1)
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+set fmri(noisear) 0.34
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+
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+# Motion correction
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+# 0 : None
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+# 1 : MCFLIRT
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+set fmri(mc) 1
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+
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+# Spin-history (currently obsolete)
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+set fmri(sh_yn) 0
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+
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+# B0 fieldmap unwarping?
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+set fmri(regunwarp_yn) 0
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+
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+# EPI dwell time (ms)
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+set fmri(dwell) 0.7
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+
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+# EPI TE (ms)
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+set fmri(te) 35
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+
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+# % Signal loss threshold
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+set fmri(signallossthresh) 10
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+
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+# Unwarp direction
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+set fmri(unwarp_dir) y-
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+
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+# Slice timing correction
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+# 0 : None
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+# 1 : Regular up (0, 1, 2, 3, ...)
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+# 2 : Regular down
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+# 3 : Use slice order file
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+# 4 : Use slice timings file
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+# 5 : Interleaved (0, 2, 4 ... 1, 3, 5 ... )
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+set fmri(st) 0
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+
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+# Slice timings file
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+set fmri(st_file) ""
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+
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+# BET brain extraction
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+set fmri(bet_yn) 1
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+
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+# Spatial smoothing FWHM (mm)
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+set fmri(smooth) 5
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+
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+# Intensity normalization
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+set fmri(norm_yn) 0
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+
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+# Perfusion subtraction
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+set fmri(perfsub_yn) 0
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+
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+# Highpass temporal filtering
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+set fmri(temphp_yn) 1
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+
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+# Lowpass temporal filtering
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+set fmri(templp_yn) 0
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+
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+# MELODIC ICA data exploration
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+set fmri(melodic_yn) 0
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+
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+# Carry out main stats?
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+set fmri(stats_yn) 1
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+
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+# Carry out prewhitening?
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+set fmri(prewhiten_yn) 1
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+
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+# Add motion parameters to model
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+# 0 : No
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+# 1 : Yes
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+set fmri(motionevs) 0
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+set fmri(motionevsbeta) ""
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+set fmri(scriptevsbeta) ""
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+
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+# Robust outlier detection in FLAME?
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+set fmri(robust_yn) 1
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+
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+# Higher-level modelling
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+# 3 : Fixed effects
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+# 0 : Mixed Effects: Simple OLS
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+# 2 : Mixed Effects: FLAME 1
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+# 1 : Mixed Effects: FLAME 1+2
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+set fmri(mixed_yn) 2
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+
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+# Number of EVs
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+set fmri(evs_orig) 1
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+set fmri(evs_real) 1
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+set fmri(evs_vox) 0
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+
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+# Number of contrasts
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+set fmri(ncon_orig) 1
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+set fmri(ncon_real) 1
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+
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+# Number of F-tests
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+set fmri(nftests_orig) 0
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+set fmri(nftests_real) 0
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+
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+# Add constant column to design matrix? (obsolete)
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+set fmri(constcol) 0
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+
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+# Carry out post-stats steps?
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+set fmri(poststats_yn) 0
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+
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+# Pre-threshold masking?
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+set fmri(threshmask) ""
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+
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+# Thresholding
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+# 0 : None
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+# 1 : Uncorrected
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+# 2 : Voxel
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+# 3 : Cluster
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+set fmri(thresh) 3
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+
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+# P threshold
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+set fmri(prob_thresh) 0.05
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+
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+# Z threshold
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+set fmri(z_thresh) 1.64
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+
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+# Z min/max for colour rendering
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+# 0 : Use actual Z min/max
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+# 1 : Use preset Z min/max
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+set fmri(zdisplay) 0
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+
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+# Z min in colour rendering
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+set fmri(zmin) 2
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+
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+# Z max in colour rendering
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+set fmri(zmax) 8
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+
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+# Colour rendering type
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+# 0 : Solid blobs
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+# 1 : Transparent blobs
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+set fmri(rendertype) 1
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+
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+# Background image for higher-level stats overlays
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+# 1 : Mean highres
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+# 2 : First highres
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+# 3 : Mean functional
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+# 4 : First functional
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+# 5 : Standard space template
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+set fmri(bgimage) 5
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+
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+# Create time series plots
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+set fmri(tsplot_yn) 0
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+
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+# Registration to initial structural
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+set fmri(reginitial_highres_yn) 0
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+
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+# Search space for registration to initial structural
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+# 0 : No search
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+# 90 : Normal search
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+# 180 : Full search
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+set fmri(reginitial_highres_search) 90
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+
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+# Degrees of Freedom for registration to initial structural
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+set fmri(reginitial_highres_dof) 3
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+
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+# Registration to main structural
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+set fmri(reghighres_yn) 0
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+
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+# Search space for registration to main structural
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+# 0 : No search
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+# 90 : Normal search
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+# 180 : Full search
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+set fmri(reghighres_search) 90
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+
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+# Degrees of Freedom for registration to main structural
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+set fmri(reghighres_dof) BBR
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+
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+# Registration to standard image?
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+set fmri(regstandard_yn) 1
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+
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+# Use alternate reference images?
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+set fmri(alternateReference_yn) 0
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+
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+# Standard image
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+set fmri(regstandard) "/usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain"
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+
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+# Search space for registration to standard space
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+# 0 : No search
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+# 90 : Normal search
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+# 180 : Full search
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+set fmri(regstandard_search) 90
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+
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+# Degrees of Freedom for registration to standard space
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+set fmri(regstandard_dof) 12
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+
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+# Do nonlinear registration from structural to standard space?
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+set fmri(regstandard_nonlinear_yn) 0
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+
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+# Control nonlinear warp field resolution
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+set fmri(regstandard_nonlinear_warpres) 10
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+
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+# High pass filter cutoff
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+set fmri(paradigm_hp) 100
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+
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+# Number of lower-level copes feeding into higher-level analysis
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+set fmri(ncopeinputs) 10
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+
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+# Use lower-level cope 1 for higher-level analysis
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+set fmri(copeinput.1) 1
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+
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+# Use lower-level cope 2 for higher-level analysis
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+set fmri(copeinput.2) 1
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+
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+# Use lower-level cope 3 for higher-level analysis
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+set fmri(copeinput.3) 1
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+
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+# Use lower-level cope 4 for higher-level analysis
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+set fmri(copeinput.4) 1
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+
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+# Use lower-level cope 5 for higher-level analysis
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+set fmri(copeinput.5) 1
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+
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+# Use lower-level cope 6 for higher-level analysis
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+set fmri(copeinput.6) 1
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+
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+# Use lower-level cope 7 for higher-level analysis
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+set fmri(copeinput.7) 1
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+
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+# Use lower-level cope 8 for higher-level analysis
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+set fmri(copeinput.8) 1
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+
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+# Use lower-level cope 9 for higher-level analysis
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+set fmri(copeinput.9) 1
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+
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+# Use lower-level cope 10 for higher-level analysis
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+set fmri(copeinput.10) 1
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+
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+# 4D AVW data or FEAT directory (1)
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+set feat_files(1) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/run-1.feat"
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+
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+# 4D AVW data or FEAT directory (2)
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+set feat_files(2) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/run-2.feat"
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+
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+# 4D AVW data or FEAT directory (3)
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+set feat_files(3) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/run-3.feat"
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+
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+# 4D AVW data or FEAT directory (4)
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+set feat_files(4) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/run-4.feat"
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+
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+# Add confound EVs text file
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+set fmri(confoundevs) 0
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+
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+# EV 1 title
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+set fmri(evtitle1) ""
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+
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+# Basic waveform shape (EV 1)
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+# 0 : Square
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+# 1 : Sinusoid
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+# 2 : Custom (1 entry per volume)
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+# 3 : Custom (3 column format)
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+# 4 : Interaction
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+# 10 : Empty (all zeros)
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+set fmri(shape1) 2
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+
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+# Convolution (EV 1)
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+# 0 : None
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+# 1 : Gaussian
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+# 2 : Gamma
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+# 3 : Double-Gamma HRF
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+# 4 : Gamma basis functions
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+# 5 : Sine basis functions
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+# 6 : FIR basis functions
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+set fmri(convolve1) 0
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+
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+# Convolve phase (EV 1)
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+set fmri(convolve_phase1) 0
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+
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+# Apply temporal filtering (EV 1)
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+set fmri(tempfilt_yn1) 0
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+
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+# Add temporal derivative (EV 1)
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+set fmri(deriv_yn1) 0
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+
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+# Custom EV file (EV 1)
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+set fmri(custom1) "dummy"
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+
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+# Orthogonalise EV 1 wrt EV 0
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+set fmri(ortho1.0) 0
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+
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+# Orthogonalise EV 1 wrt EV 1
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+set fmri(ortho1.1) 0
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+
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+# Higher-level EV value for EV 1 and input 1
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+set fmri(evg1.1) 1
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+
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+# Higher-level EV value for EV 1 and input 2
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+set fmri(evg2.1) 1
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+
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+# Higher-level EV value for EV 1 and input 3
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+set fmri(evg3.1) 1
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+
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+# Higher-level EV value for EV 1 and input 4
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+set fmri(evg4.1) 1
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+
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+# Group membership for input 1
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+set fmri(groupmem.1) 1
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+
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+# Group membership for input 2
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+set fmri(groupmem.2) 1
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+
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+# Group membership for input 3
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+set fmri(groupmem.3) 1
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+
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+# Group membership for input 4
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+set fmri(groupmem.4) 1
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+
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+# Contrast & F-tests mode
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+# real : control real EVs
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+# orig : control original EVs
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+set fmri(con_mode_old) real
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+set fmri(con_mode) real
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+
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+# Display images for contrast_real 1
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+set fmri(conpic_real.1) 1
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+
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+# Title for contrast_real 1
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+set fmri(conname_real.1) "group mean"
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+
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+# Real contrast_real vector 1 element 1
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+set fmri(con_real1.1) 1
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+
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+# Contrast masking - use >0 instead of thresholding?
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+set fmri(conmask_zerothresh_yn) 0
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+
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+# Do contrast masking at all?
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+set fmri(conmask1_1) 0
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+
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+##########################################################
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+# Now options that don't appear in the GUI
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+
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+# Alternative (to BETting) mask image
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+set fmri(alternative_mask) ""
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+
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+# Initial structural space registration initialisation transform
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+set fmri(init_initial_highres) ""
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+
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+# Structural space registration initialisation transform
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+set fmri(init_highres) ""
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+
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+# Standard space registration initialisation transform
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+set fmri(init_standard) ""
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+
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+# For full FEAT analysis: overwrite existing .feat output dir?
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+set fmri(overwrite_yn) 0
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