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Convert BIDS onset info to FSL's EV3 files

Michael Hanke 8 years ago
commit
38ef2ef862
100 changed files with 131 additions and 0 deletions
Split View Show Diff Stats
  1. 9 0
      .gitmodules
  2. 25 0
      code/events2ev3.sh
  3. 1 0
      src/aligned
  4. 1 0
      src/phase2
  5. 1 0
      src/tnt
  6. 1 0
      sub-01/onsets/run-1/body.txt
  7. 1 0
      sub-01/onsets/run-1/face.txt
  8. 1 0
      sub-01/onsets/run-1/house.txt
  9. 1 0
      sub-01/onsets/run-1/object.txt
  10. 1 0
      sub-01/onsets/run-1/scene.txt
  11. 1 0
      sub-01/onsets/run-1/scramble.txt
  12. 1 0
      sub-01/onsets/run-2/body.txt
  13. 1 0
      sub-01/onsets/run-2/face.txt
  14. 1 0
      sub-01/onsets/run-2/house.txt
  15. 1 0
      sub-01/onsets/run-2/object.txt
  16. 1 0
      sub-01/onsets/run-2/scene.txt
  17. 1 0
      sub-01/onsets/run-2/scramble.txt
  18. 1 0
      sub-01/onsets/run-3/body.txt
  19. 1 0
      sub-01/onsets/run-3/face.txt
  20. 1 0
      sub-01/onsets/run-3/house.txt
  21. 1 0
      sub-01/onsets/run-3/object.txt
  22. 1 0
      sub-01/onsets/run-3/scene.txt
  23. 1 0
      sub-01/onsets/run-3/scramble.txt
  24. 1 0
      sub-01/onsets/run-4/body.txt
  25. 1 0
      sub-01/onsets/run-4/face.txt
  26. 1 0
      sub-01/onsets/run-4/house.txt
  27. 1 0
      sub-01/onsets/run-4/object.txt
  28. 1 0
      sub-01/onsets/run-4/scene.txt
  29. 1 0
      sub-01/onsets/run-4/scramble.txt
  30. 1 0
      sub-02/onsets/run-1/body.txt
  31. 1 0
      sub-02/onsets/run-1/face.txt
  32. 1 0
      sub-02/onsets/run-1/house.txt
  33. 1 0
      sub-02/onsets/run-1/object.txt
  34. 1 0
      sub-02/onsets/run-1/scene.txt
  35. 1 0
      sub-02/onsets/run-1/scramble.txt
  36. 1 0
      sub-02/onsets/run-2/body.txt
  37. 1 0
      sub-02/onsets/run-2/face.txt
  38. 1 0
      sub-02/onsets/run-2/house.txt
  39. 1 0
      sub-02/onsets/run-2/object.txt
  40. 1 0
      sub-02/onsets/run-2/scene.txt
  41. 1 0
      sub-02/onsets/run-2/scramble.txt
  42. 1 0
      sub-02/onsets/run-3/body.txt
  43. 1 0
      sub-02/onsets/run-3/face.txt
  44. 1 0
      sub-02/onsets/run-3/house.txt
  45. 1 0
      sub-02/onsets/run-3/object.txt
  46. 1 0
      sub-02/onsets/run-3/scene.txt
  47. 1 0
      sub-02/onsets/run-3/scramble.txt
  48. 1 0
      sub-02/onsets/run-4/body.txt
  49. 1 0
      sub-02/onsets/run-4/face.txt
  50. 1 0
      sub-02/onsets/run-4/house.txt
  51. 1 0
      sub-02/onsets/run-4/object.txt
  52. 1 0
      sub-02/onsets/run-4/scene.txt
  53. 1 0
      sub-02/onsets/run-4/scramble.txt
  54. 1 0
      sub-03/onsets/run-1/body.txt
  55. 1 0
      sub-03/onsets/run-1/face.txt
  56. 1 0
      sub-03/onsets/run-1/house.txt
  57. 1 0
      sub-03/onsets/run-1/object.txt
  58. 1 0
      sub-03/onsets/run-1/scene.txt
  59. 1 0
      sub-03/onsets/run-1/scramble.txt
  60. 1 0
      sub-03/onsets/run-2/body.txt
  61. 1 0
      sub-03/onsets/run-2/face.txt
  62. 1 0
      sub-03/onsets/run-2/house.txt
  63. 1 0
      sub-03/onsets/run-2/object.txt
  64. 1 0
      sub-03/onsets/run-2/scene.txt
  65. 1 0
      sub-03/onsets/run-2/scramble.txt
  66. 1 0
      sub-03/onsets/run-3/body.txt
  67. 1 0
      sub-03/onsets/run-3/face.txt
  68. 1 0
      sub-03/onsets/run-3/house.txt
  69. 1 0
      sub-03/onsets/run-3/object.txt
  70. 1 0
      sub-03/onsets/run-3/scene.txt
  71. 1 0
      sub-03/onsets/run-3/scramble.txt
  72. 1 0
      sub-03/onsets/run-4/body.txt
  73. 1 0
      sub-03/onsets/run-4/face.txt
  74. 1 0
      sub-03/onsets/run-4/house.txt
  75. 1 0
      sub-03/onsets/run-4/object.txt
  76. 1 0
      sub-03/onsets/run-4/scene.txt
  77. 1 0
      sub-03/onsets/run-4/scramble.txt
  78. 1 0
      sub-04/onsets/run-1/body.txt
  79. 1 0
      sub-04/onsets/run-1/face.txt
  80. 1 0
      sub-04/onsets/run-1/house.txt
  81. 1 0
      sub-04/onsets/run-1/object.txt
  82. 1 0
      sub-04/onsets/run-1/scene.txt
  83. 1 0
      sub-04/onsets/run-1/scramble.txt
  84. 1 0
      sub-04/onsets/run-2/body.txt
  85. 1 0
      sub-04/onsets/run-2/face.txt
  86. 1 0
      sub-04/onsets/run-2/house.txt
  87. 1 0
      sub-04/onsets/run-2/object.txt
  88. 1 0
      sub-04/onsets/run-2/scene.txt
  89. 1 0
      sub-04/onsets/run-2/scramble.txt
  90. 1 0
      sub-04/onsets/run-3/body.txt
  91. 1 0
      sub-04/onsets/run-3/face.txt
  92. 1 0
      sub-04/onsets/run-3/house.txt
  93. 1 0
      sub-04/onsets/run-3/object.txt
  94. 1 0
      sub-04/onsets/run-3/scene.txt
  95. 1 0
      sub-04/onsets/run-3/scramble.txt
  96. 1 0
      sub-04/onsets/run-4/body.txt
  97. 1 0
      sub-04/onsets/run-4/face.txt
  98. 1 0
      sub-04/onsets/run-4/house.txt
  99. 1 0
      sub-04/onsets/run-4/object.txt
  100. 0 0
      sub-04/onsets/run-4/scene.txt

+ 9 - 0
.gitmodules
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@@ -0,0 +1,9 @@
 
+[submodule "src/phase2"]
 
+	path = src/phase2
 
+	url = ../phase2
 
+[submodule "src/tnt"]
 
+	path = src/tnt
 
+	url = ../tnt
 
+[submodule "src/aligned"]
 
+	path = src/aligned
 
+	url = ../aligned

+ 25 - 0
code/events2ev3.sh
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@@ -0,0 +1,25 @@
 
+#!/bin/bash
 
+#
 
+# Convert BIDS events.tsv to FSL's EV3 files
 
+
 
+set -e
 
+set -u
 
+
 
+# little helper
 
+printf "1.0\n1.0\n" > ones.txt
 
+
 
+for s in src/phase2/sub-*; do
 
+  subj=$(basename $s)
 
+  echo $subj
 
+  for r in $(seq 4); do
 
+    echo $r
 
+    mkdir -p $subj/onsets/run-$r
 
+    for c in face scene body house object scramble; do
 
+      grep $c \
 
+        src/phase2/$subj/ses-localizer/func/$subj*object*_run-${r}_events.tsv \
 
+        | cut -f 1,2 \
 
+        | paste - ones.txt \
 
+        > $subj/onsets/run-$r/$c.txt
 
+    done
 
+  done
 
+done

+ 1 - 0
src/aligned 

@@ -0,0 +1 @@
 
+Subproject commit 8bf66e5fd3a64f8add68c49079ace173f6d5bac2

+ 1 - 0
src/phase2 

@@ -0,0 +1 @@
 
+Subproject commit 7c15ec5cb51ae89531fee77c6c9acdcc3bc9ba94

+ 1 - 0
src/tnt 

@@ -0,0 +1 @@
 
+Subproject commit fac413eaa891fa9c0629c98ad0331cdfdd19a9ba

+ 1 - 0
sub-01/onsets/run-1/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/6f/8K/MD5E-s29--f45ce7a951ed955095b5f72f62b1e879.txt/MD5E-s29--f45ce7a951ed955095b5f72f62b1e879.txt

+ 1 - 0
sub-01/onsets/run-1/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/mv/P6/MD5E-s29--48ffa1f69d0d94caab5d22619a33fca8.txt/MD5E-s29--48ffa1f69d0d94caab5d22619a33fca8.txt

+ 1 - 0
sub-01/onsets/run-1/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/5J/VZ/MD5E-s29--3149fbeac9fb8c274ef1bfa3f24b3e93.txt/MD5E-s29--3149fbeac9fb8c274ef1bfa3f24b3e93.txt

+ 1 - 0
sub-01/onsets/run-1/object.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/w4/5Z/MD5E-s30--29ac742d7078e4b0a83438d0b2752835.txt/MD5E-s30--29ac742d7078e4b0a83438d0b2752835.txt

+ 1 - 0
sub-01/onsets/run-1/scene.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Jv/MG/MD5E-s29--b114d184fda249a1898534b95118fa5a.txt/MD5E-s29--b114d184fda249a1898534b95118fa5a.txt

+ 1 - 0
sub-01/onsets/run-1/scramble.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/86/wz/MD5E-s30--c277ef98df7039516d78ee580158a3ce.txt/MD5E-s30--c277ef98df7039516d78ee580158a3ce.txt

+ 1 - 0
sub-01/onsets/run-2/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/k8/m5/MD5E-s29--c2014cc52e580725726123a680fb19ba.txt/MD5E-s29--c2014cc52e580725726123a680fb19ba.txt

+ 1 - 0
sub-01/onsets/run-2/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/4f/ff/MD5E-s29--7a81419d81a8600db0cabcd9d4e40ee6.txt/MD5E-s29--7a81419d81a8600db0cabcd9d4e40ee6.txt

+ 1 - 0
sub-01/onsets/run-2/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/5J/VZ/MD5E-s29--3149fbeac9fb8c274ef1bfa3f24b3e93.txt/MD5E-s29--3149fbeac9fb8c274ef1bfa3f24b3e93.txt

+ 1 - 0
sub-01/onsets/run-2/object.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/w4/5Z/MD5E-s30--29ac742d7078e4b0a83438d0b2752835.txt/MD5E-s30--29ac742d7078e4b0a83438d0b2752835.txt

+ 1 - 0
sub-01/onsets/run-2/scene.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Jv/MG/MD5E-s29--b114d184fda249a1898534b95118fa5a.txt/MD5E-s29--b114d184fda249a1898534b95118fa5a.txt

+ 1 - 0
sub-01/onsets/run-2/scramble.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Fg/6M/MD5E-s30--08cfb9180caa3992d07d2b7a18297fd5.txt/MD5E-s30--08cfb9180caa3992d07d2b7a18297fd5.txt

+ 1 - 0
sub-01/onsets/run-3/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/k8/m5/MD5E-s29--c2014cc52e580725726123a680fb19ba.txt/MD5E-s29--c2014cc52e580725726123a680fb19ba.txt

+ 1 - 0
sub-01/onsets/run-3/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/7k/Q8/MD5E-s29--6d43d14dfe3c03edc050285ef74302b9.txt/MD5E-s29--6d43d14dfe3c03edc050285ef74302b9.txt

+ 1 - 0
sub-01/onsets/run-3/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/5J/VZ/MD5E-s29--3149fbeac9fb8c274ef1bfa3f24b3e93.txt/MD5E-s29--3149fbeac9fb8c274ef1bfa3f24b3e93.txt

+ 1 - 0
sub-01/onsets/run-3/object.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/QV/Z6/MD5E-s30--5dfa95a862bda1edac952e8e66e4526a.txt/MD5E-s30--5dfa95a862bda1edac952e8e66e4526a.txt

+ 1 - 0
sub-01/onsets/run-3/scene.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Jv/MG/MD5E-s29--b114d184fda249a1898534b95118fa5a.txt/MD5E-s29--b114d184fda249a1898534b95118fa5a.txt

+ 1 - 0
sub-01/onsets/run-3/scramble.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/QW/95/MD5E-s30--b2dfe2144a07a1180042c772b48ff75c.txt/MD5E-s30--b2dfe2144a07a1180042c772b48ff75c.txt

+ 1 - 0
sub-01/onsets/run-4/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/k8/m5/MD5E-s29--c2014cc52e580725726123a680fb19ba.txt/MD5E-s29--c2014cc52e580725726123a680fb19ba.txt

+ 1 - 0
sub-01/onsets/run-4/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/8Z/jJ/MD5E-s29--d8f7a8ec302cff9e69c4da1781833b01.txt/MD5E-s29--d8f7a8ec302cff9e69c4da1781833b01.txt

+ 1 - 0
sub-01/onsets/run-4/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Q2/G9/MD5E-s29--2d30f5e8960be42b7b35567d90ccf371.txt/MD5E-s29--2d30f5e8960be42b7b35567d90ccf371.txt

+ 1 - 0
sub-01/onsets/run-4/object.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/QV/Z6/MD5E-s30--5dfa95a862bda1edac952e8e66e4526a.txt/MD5E-s30--5dfa95a862bda1edac952e8e66e4526a.txt

+ 1 - 0
sub-01/onsets/run-4/scene.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/mk/gW/MD5E-s29--bd6361554eb135530b9c5b69a2e6bd2b.txt/MD5E-s29--bd6361554eb135530b9c5b69a2e6bd2b.txt

+ 1 - 0
sub-01/onsets/run-4/scramble.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/QW/95/MD5E-s30--b2dfe2144a07a1180042c772b48ff75c.txt/MD5E-s30--b2dfe2144a07a1180042c772b48ff75c.txt

+ 1 - 0
sub-02/onsets/run-1/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/9W/X2/MD5E-s29--2ffb659f89da43afa279aad3a50d0fe6.txt/MD5E-s29--2ffb659f89da43afa279aad3a50d0fe6.txt

+ 1 - 0
sub-02/onsets/run-1/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Jj/91/MD5E-s29--5fec6daf262693594b9a4fccdcedd522.txt/MD5E-s29--5fec6daf262693594b9a4fccdcedd522.txt

+ 1 - 0
sub-02/onsets/run-1/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/GV/j3/MD5E-s29--bd8f252fb585268964af3130700fb221.txt/MD5E-s29--bd8f252fb585268964af3130700fb221.txt

+ 1 - 0
sub-02/onsets/run-1/object.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/1m/G4/MD5E-s30--2de288faee3b3b9cd943f4db7da97191.txt/MD5E-s30--2de288faee3b3b9cd943f4db7da97191.txt

+ 1 - 0
sub-02/onsets/run-1/scene.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/P1/MK/MD5E-s29--98a2404514119782fb9c169275a9902c.txt/MD5E-s29--98a2404514119782fb9c169275a9902c.txt

+ 1 - 0
sub-02/onsets/run-1/scramble.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/xz/WF/MD5E-s30--746cb00deddb6a6beea71c95f7af4341.txt/MD5E-s30--746cb00deddb6a6beea71c95f7af4341.txt

+ 1 - 0
sub-02/onsets/run-2/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/F2/JZ/MD5E-s29--73282a759c30e70e8c7a41005d65d1ed.txt/MD5E-s29--73282a759c30e70e8c7a41005d65d1ed.txt

+ 1 - 0
sub-02/onsets/run-2/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/PJ/F8/MD5E-s29--9bd998fabb320823df953f006ce72f0e.txt/MD5E-s29--9bd998fabb320823df953f006ce72f0e.txt

+ 1 - 0
sub-02/onsets/run-2/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/VF/kw/MD5E-s29--c4c476e6e2a1b3d2498bc0f38b07cbb8.txt/MD5E-s29--c4c476e6e2a1b3d2498bc0f38b07cbb8.txt

+ 1 - 0
sub-02/onsets/run-2/object.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/gX/KP/MD5E-s30--797d67f8b8353bbc563b5a9d67573ef3.txt/MD5E-s30--797d67f8b8353bbc563b5a9d67573ef3.txt

+ 1 - 0
sub-02/onsets/run-2/scene.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/80/5P/MD5E-s29--a3f96d69ec7395fb909233df26658031.txt/MD5E-s29--a3f96d69ec7395fb909233df26658031.txt

+ 1 - 0
sub-02/onsets/run-2/scramble.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/7g/6G/MD5E-s30--7266e8354bf367259c1ce2fa3c19b010.txt/MD5E-s30--7266e8354bf367259c1ce2fa3c19b010.txt

+ 1 - 0
sub-02/onsets/run-3/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/9W/X2/MD5E-s29--2ffb659f89da43afa279aad3a50d0fe6.txt/MD5E-s29--2ffb659f89da43afa279aad3a50d0fe6.txt

+ 1 - 0
sub-02/onsets/run-3/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/PJ/F8/MD5E-s29--9bd998fabb320823df953f006ce72f0e.txt/MD5E-s29--9bd998fabb320823df953f006ce72f0e.txt

+ 1 - 0
sub-02/onsets/run-3/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/WJ/mM/MD5E-s29--417360f06051552dc81510be99ae7a62.txt/MD5E-s29--417360f06051552dc81510be99ae7a62.txt

+ 1 - 0
sub-02/onsets/run-3/object.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Km/v9/MD5E-s30--be25883500acd55575ebc4974bb40a7a.txt/MD5E-s30--be25883500acd55575ebc4974bb40a7a.txt

+ 1 - 0
sub-02/onsets/run-3/scene.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Q4/4v/MD5E-s29--d08826b9728879762919d643bd8f7116.txt/MD5E-s29--d08826b9728879762919d643bd8f7116.txt

+ 1 - 0
sub-02/onsets/run-3/scramble.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/7g/6G/MD5E-s30--7266e8354bf367259c1ce2fa3c19b010.txt/MD5E-s30--7266e8354bf367259c1ce2fa3c19b010.txt

+ 1 - 0
sub-02/onsets/run-4/body.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/9W/X2/MD5E-s29--2ffb659f89da43afa279aad3a50d0fe6.txt/MD5E-s29--2ffb659f89da43afa279aad3a50d0fe6.txt

+ 1 - 0
sub-02/onsets/run-4/face.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/PJ/F8/MD5E-s29--9bd998fabb320823df953f006ce72f0e.txt/MD5E-s29--9bd998fabb320823df953f006ce72f0e.txt

+ 1 - 0
sub-02/onsets/run-4/house.txt
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/WJ/mM/MD5E-s29--417360f06051552dc81510be99ae7a62.txt/MD5E-s29--417360f06051552dc81510be99ae7a62.txt

+ 1 - 0
sub-02/onsets/run-4/object.txt
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