wmsnr.log 2.9 KB

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  1. Fri Aug 9 09:51:31 CEST 2013
  2. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  3. cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016
  4. /opt/freesurfer/5.3.0/bin/wm-anat-snr --s sub016
  5. subject sub016
  6. /opt/freesurfer/5.3.0
  7. freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
  8. Linux medusa.ovgu.de 2.6.32-5-amd64 #1 SMP Sun Sep 23 10:07:46 UTC 2012 x86_64 GNU/Linux
  9. $Id: wm-anat-snr,v 1.2 2011/01/21 23:11:47 greve Exp $
  10. UpdateOnly 1
  11. mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79
  12. $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
  13. cwd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016
  14. cmdline mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79
  15. sysname Linux
  16. hostname medusa.ovgu.de
  17. machine x86_64
  18. user fkaule
  19. input /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/aparc+aseg.mgz
  20. frame 0
  21. nErode3d 3
  22. nErode2d 0
  23. output /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh
  24. Binarizing based on matching values
  25. nMatch 12
  26. 0 2
  27. 1 41
  28. 2 7
  29. 3 46
  30. 4 251
  31. 5 252
  32. 6 253
  33. 7 254
  34. 8 255
  35. 9 77
  36. 10 78
  37. 11 79
  38. binval 1
  39. binvalnot 0
  40. Found 543057 values in range
  41. Eroding 3 voxels in 3d
  42. Counting number of voxels
  43. Found 48002 voxels in final mask
  44. mri_binarize done
  45. mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/norm.mgz --excludeid 0
  46. $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
  47. cwd
  48. cmdline mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/norm.mgz --excludeid 0
  49. sysname Linux
  50. hostname medusa.ovgu.de
  51. machine x86_64
  52. user fkaule
  53. UseRobust 0
  54. Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh
  55. Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/norm.mgz
  56. Voxel Volume is 1 mm^3
  57. Generating list of segmentation ids
  58. Found 2 segmentations
  59. Computing statistics for each segmentation
  60. 1 1 48002 48002.000
  61. Reporting on 1 segmentations
  62. mri_segstats done
  63. sub016 14.82 104.47 7.05 48002 3
  64. Fri Aug 9 09:51:51 CEST 2013
  65. wm-anat-snr done