Fri Aug 9 09:51:31 CEST 2013 setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016 /opt/freesurfer/5.3.0/bin/wm-anat-snr --s sub016 subject sub016 /opt/freesurfer/5.3.0 freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux medusa.ovgu.de 2.6.32-5-amd64 #1 SMP Sun Sep 23 10:07:46 UTC 2012 x86_64 GNU/Linux $Id: wm-anat-snr,v 1.2 2011/01/21 23:11:47 greve Exp $ UpdateOnly 1 mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79 $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016 cmdline mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79 sysname Linux hostname medusa.ovgu.de machine x86_64 user fkaule input /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/aparc+aseg.mgz frame 0 nErode3d 3 nErode2d 0 output /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh Binarizing based on matching values nMatch 12 0 2 1 41 2 7 3 46 4 251 5 252 6 253 7 254 8 255 9 77 10 78 11 79 binval 1 binvalnot 0 Found 543057 values in range Eroding 3 voxels in 3d Counting number of voxels Found 48002 voxels in final mask mri_binarize done mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/norm.mgz --excludeid 0 $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/norm.mgz --excludeid 0 sysname Linux hostname medusa.ovgu.de machine x86_64 user fkaule UseRobust 0 Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/tmp/wmeroded.mgh Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 2 segmentations Computing statistics for each segmentation 1 1 48002 48002.000 Reporting on 1 segmentations mri_segstats done sub016 14.82 104.47 7.05 48002 3 Fri Aug 9 09:51:51 CEST 2013 wm-anat-snr done