cortical-surfaces-freesurfer/sub-16/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake6
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat
subject sub016
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376990004
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.999  -0.029  -0.023   0.034;
 0.022  -0.039   0.999   0.608;
-0.030  -0.999  -0.039  -0.487;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 304481
WM  Intensity0    56.5409 +/-   7.1624
Ctx Intensity0    67.6348 +/-   7.7629
Pct Contrast0     17.8592 +/-  12.5660
Cost   0.1417
RelCost   0.1404

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1471   0.1471  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1459   0.1459  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1439   0.1439  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1434   0.1434  0.0
    13  -0.1000  -0.1000  -0.1000   0.0000   0.0000   0.0000      0.1426   0.1426  0.0
    22  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1399   0.1399  0.0
    39  -0.1000  -0.1000   0.0000   0.0000   0.0000  -0.1000      0.1396   0.1396  0.0
    40  -0.1000  -0.1000   0.0000   0.0000   0.0000   0.0000      0.1377   0.1377  0.0
    49  -0.1000  -0.1000   0.0000   0.1000   0.0000   0.0000      0.1362   0.1362  0.0
    67  -0.1000  -0.1000   0.1000   0.0000   0.0000   0.0000      0.1344   0.1344  0.0
   130  -0.1000   0.0000   0.0000   0.1000   0.0000   0.0000      0.1344   0.1344  0.0
   148  -0.1000   0.0000   0.1000   0.0000   0.0000   0.0000      0.1342   0.1342  0.0
   157  -0.1000   0.0000   0.1000   0.1000   0.0000   0.0000      0.1342   0.1342  0.0
   211  -0.1000   0.1000   0.0000   0.1000   0.0000   0.0000      0.1332   0.1332  0.0

Final costs ----------------
Number of surface hits 304481
WM  Intensity0    56.5318 +/-   7.1402
Ctx Intensity0    67.5968 +/-   7.7119
Pct Contrast0     17.8233 +/-  12.4061
Cost   0.1343
RelCost   0.1404
Number of iterations     7
Min cost was 0.134270
RelMinCost   0.1331
Number of FunctionCalls   527
OptimizationTime 69.051000 sec
Parameters at optimum (transmm, rotdeg)
-0.02074  0.16374  0.22181 -0.01581 -0.07641  0.03234 
Number of surface hits 304481
WM  Intensity    56.5318 +/-   7.1402
Ctx Intensity    67.5968 +/-   7.7119
Pct Contrast     17.8233 +/-  12.4061
Cost at optimum   0.1343
RelCostOptimum   0.1331
nhits= 304481 wmmn=   56.5318 wmstd=  7.1402 constd=   12.4061 ctxmn=   67.5968 ctxstd=  7.7119 conmn =  17.8233 costmn =   0.1343 
#C#  -0.021   0.164   0.222 -0.016 -0.076  0.032 0.000000 0.000000 0.134270 56.531808 67.596836 17.823343 0.000000 0.500000     1 0
Reg at min cost was 
 0.999  -0.028  -0.023   0.013;
 0.022  -0.040   0.999   0.772;
-0.029  -0.999  -0.039  -0.265;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000  -0.001   0.001   0.020;
-0.001   0.000   0.000  -0.164;
-0.001   0.000   0.000  -0.222;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.284066 0.379271