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- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake6
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat
- subject sub016
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376990004
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.029 -0.023 0.034;
- 0.022 -0.039 0.999 0.608;
- -0.030 -0.999 -0.039 -0.487;
- 0.000 0.000 0.000 1.000;
- Initial costs ----------------
- Number of surface hits 304481
- WM Intensity0 56.5409 +/- 7.1624
- Ctx Intensity0 67.6348 +/- 7.7629
- Pct Contrast0 17.8592 +/- 12.5660
- Cost 0.1417
- RelCost 0.1404
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1471 0.1471 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1459 0.1459 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1439 0.1439 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1434 0.1434 0.0
- 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1426 0.1426 0.0
- 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1399 0.1399 0.0
- 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.1396 0.1396 0.0
- 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1377 0.1377 0.0
- 49 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1362 0.1362 0.0
- 67 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.0000 0.1344 0.1344 0.0
- 130 -0.1000 0.0000 0.0000 0.1000 0.0000 0.0000 0.1344 0.1344 0.0
- 148 -0.1000 0.0000 0.1000 0.0000 0.0000 0.0000 0.1342 0.1342 0.0
- 157 -0.1000 0.0000 0.1000 0.1000 0.0000 0.0000 0.1342 0.1342 0.0
- 211 -0.1000 0.1000 0.0000 0.1000 0.0000 0.0000 0.1332 0.1332 0.0
- Final costs ----------------
- Number of surface hits 304481
- WM Intensity0 56.5318 +/- 7.1402
- Ctx Intensity0 67.5968 +/- 7.7119
- Pct Contrast0 17.8233 +/- 12.4061
- Cost 0.1343
- RelCost 0.1404
- Number of iterations 7
- Min cost was 0.134270
- RelMinCost 0.1331
- Number of FunctionCalls 527
- OptimizationTime 69.051000 sec
- Parameters at optimum (transmm, rotdeg)
- -0.02074 0.16374 0.22181 -0.01581 -0.07641 0.03234
- Number of surface hits 304481
- WM Intensity 56.5318 +/- 7.1402
- Ctx Intensity 67.5968 +/- 7.7119
- Pct Contrast 17.8233 +/- 12.4061
- Cost at optimum 0.1343
- RelCostOptimum 0.1331
- nhits= 304481 wmmn= 56.5318 wmstd= 7.1402 constd= 12.4061 ctxmn= 67.5968 ctxstd= 7.7119 conmn = 17.8233 costmn = 0.1343
- #C# -0.021 0.164 0.222 -0.016 -0.076 0.032 0.000000 0.000000 0.134270 56.531808 67.596836 17.823343 0.000000 0.500000 1 0
- Reg at min cost was
- 0.999 -0.028 -0.023 0.013;
- 0.022 -0.040 0.999 0.772;
- -0.029 -0.999 -0.039 -0.265;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 -0.001 0.001 0.020;
- -0.001 0.000 0.000 -0.164;
- -0.001 0.000 0.000 -0.222;
- 0.000 0.000 0.000 0.000;
- Surface RMS Diff (mm) 0.284066 0.379271
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