cortical-surfaces-freesurfer/sub-16/mri/transforms/T2raw.dat.log

Logfile for bbregister
Thu Aug  8 23:21:40 CEST 2013

setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
/opt/freesurfer/5.3.0/bin/bbregister --s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.lta --init-fsl --T2

$Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
FREESURFER_HOME /opt/freesurfer/5.3.0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.999248, 0.0307568, 0.0236215)
j_ras = (0.0317878, 0.9985, 0.0445881)
k_ras = (0.0222147, -0.0453054, 0.998726)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii...
fslregister --s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister --dof 6 --fsvol brainmask.mgz

Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fslregister.log

Thu Aug  8 23:21:45 CEST 2013
--s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister --dof 6 --fsvol brainmask.mgz
$Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
snake6
Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
nIters 1
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/brainmask.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 1.86265e-09, 3.72529e-09)
j_ras = (1.86265e-09, 0, -1)
k_ras = (-1.97906e-09, 1, -3.72529e-09)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii...
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii --frame 0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii --frame 0 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.999248, 0.0307568, 0.0236215)
j_ras = (0.0317878, 0.9985, 0.0445881)
k_ras = (0.0222147, -0.0453054, 0.998726)
keeping frame 0
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii...
Mov determinant is -0.311066
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/reg0.24460.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat0 --s sub016 --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/reg0.24460.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii
Tmov: --------------------
-0.700   0.000   0.000   95.886;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 1, float2int = 0
Computing reg from header (and possibly input matrix)
---- Input registration matrix (computed) --------
 0.999  -0.031  -0.024  -0.000;
 0.022  -0.045   0.999  -0.000;
-0.032  -0.998  -0.045  -0.000;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.999  -0.031  -0.024  -0.000;
 0.022  -0.045   0.999  -0.000;
-0.032  -0.998  -0.045  -0.000;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub016
RegMat ---------------------------
 0.999  -0.031  -0.024  -0.000;
 0.022  -0.045   0.999  -0.000;
-0.032  -0.998  -0.045  -0.000;
 0.000   0.000   0.000   1.000;
FSLOUTPUTTYPE NIFTI 
tkreg2FSL: mov det = -0.311066, ref det = -1
Thu Aug  8 23:21:54 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat0
Thu Aug  8 23:26:14 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
tkregister2_cmdl --s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
---- FSL registration matrix --------
 0.999  -0.033  -0.022   39.132;
-0.023  -0.039  -0.999   265.314;
 0.032   0.999  -0.040   0.697;
 0.000   0.000   0.000   1.000;
---------------------------------------
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
Tmov: --------------------
-0.700   0.000   0.000   95.886;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
FSLOUTPUTTYPE NIFTI 
fsl2TkReg: mov det = -0.311066, ref det = -1
---- Input registration matrix (computed) --------
 0.999  -0.032  -0.023  -0.073;
 0.022  -0.040   0.999   2.189;
-0.033  -0.999  -0.039  -1.621;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.999  -0.032  -0.023  -0.073;
 0.022  -0.040   0.999   2.189;
-0.033  -0.999  -0.039  -1.621;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub016
RegMat ---------------------------
 0.999  -0.032  -0.023  -0.073;
 0.022  -0.040   0.999   2.189;
-0.033  -0.999  -0.039  -1.621;
 0.000   0.000   0.000   1.000;
 
Started at Thu Aug 8 23:21:45 CEST 2013 
Ended   at Thu Aug  8 23:31:55 CEST 2013
 
fslregister Done
 
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --surf orig
 
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 
sysname  Linux
hostname snake6
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat
subject sub016
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 100
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000100
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376727398
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.999  -0.032  -0.023  -0.073;
 0.022  -0.040   0.999   2.189;
-0.033  -0.999  -0.039  -1.621;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   0.991698
 1  -25.0 -25.0  25.0   1.017919
 2  -25.0  25.0 -25.0   1.014961
 3  -25.0  25.0  25.0   1.012154
 4   25.0 -25.0 -25.0   1.053511
 5   25.0 -25.0  25.0   1.038265
 6   25.0  25.0 -25.0   1.025332
 7   25.0  25.0  25.0   1.040335
REL:  8  0.497330    8.194174  1.024272 rel = 0.485545 
Initial costs ----------------
Number of surface hits 3047
WM  Intensity    58.1412 +/-   8.4125
Ctx Intensity    68.1580 +/-  13.9941
Pct Contrast     14.7458 +/-  22.3937
Cost   0.4973
RelCost   0.4855

------------------------------------
Brute force preopt -4 4 4, n = 729
     0  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000      0.9706   0.9706  0.0
     1  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000   0.0000      0.9683   0.9683  0.0
     3  -4.0000  -4.0000  -4.0000  -4.0000   0.0000  -4.0000      0.9651   0.9651  0.0
    15  -4.0000  -4.0000  -4.0000   0.0000   4.0000  -4.0000      0.8698   0.8698  0.0
    21  -4.0000  -4.0000  -4.0000   4.0000   0.0000  -4.0000      0.8503   0.8503  0.0
    39  -4.0000  -4.0000   0.0000   0.0000   0.0000  -4.0000      0.8111   0.8111  0.0
   120  -4.0000   0.0000   0.0000   0.0000   0.0000  -4.0000      0.7265   0.7265  0.0
   346   0.0000   0.0000  -4.0000   4.0000   0.0000   0.0000      0.7237   0.7237  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.4973   0.4973  0.0
Brute Force --------------------------
Min cost was 0.497330
Number of iterations   729
Search time 2.336000 sec
Parameters at best (transmm, rotdeg)
  0.000   0.000   0.000  0.000  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 0
1 0
2 0
3 0
4 0
5 0
   7  0.058  0.000  0.000  0.000  0.000  0.000   0.4962479741
   8  0.173  0.000  0.000  0.000  0.000  0.000   0.4956493570
   9  0.150  0.000  0.000  0.000  0.000  0.000   0.4954339777
  11  0.148  0.000  0.000  0.000  0.000  0.000   0.4954213621
  12  0.144  0.000  0.000  0.000  0.000  0.000   0.4954030878
  18  0.144 -1.618  0.000  0.000  0.000  0.000   0.3123496406
  23  0.144 -1.481  0.000  0.000  0.000  0.000   0.3072172974
  24  0.144 -1.427  0.000  0.000  0.000  0.000   0.3064682236
  26  0.144 -1.443  0.000  0.000  0.000  0.000   0.3063398337
  27  0.144 -1.442  0.000  0.000  0.000  0.000   0.3063332070
  28  0.144 -1.439  0.000  0.000  0.000  0.000   0.3063242057
  33  0.144 -1.439  1.000  0.000  0.000  0.000   0.1447468946
  38  0.144 -1.439  1.258  0.000  0.000  0.000   0.1406853989
  39  0.144 -1.439  1.242  0.000  0.000  0.000   0.1403118087
  40  0.144 -1.439  1.178  0.000  0.000  0.000   0.1399896185
  42  0.144 -1.439  1.199  0.000  0.000  0.000   0.1397496399
  44  0.144 -1.439  1.200  0.000  0.000  0.000   0.1397479461
  57  0.144 -1.439  1.200  0.009  0.000  0.000   0.1395871869
  58  0.144 -1.439  1.200  0.011  0.000  0.000   0.1395814210
  67  0.144 -1.439  1.200  0.011 -0.164  0.000   0.1379313531
  68  0.144 -1.439  1.200  0.011 -0.132  0.000   0.1376534846
  69  0.144 -1.439  1.200  0.011 -0.118  0.000   0.1373763056
  71  0.144 -1.439  1.200  0.011 -0.103  0.000   0.1372832564
  80  0.144 -1.439  1.200  0.011 -0.103  0.119   0.1361960394
  81  0.144 -1.439  1.200  0.011 -0.103  0.101   0.1360196246
  82  0.144 -1.439  1.200  0.011 -0.103  0.083   0.1359179116
  84  0.144 -1.439  1.200  0.011 -0.103  0.079   0.1359153918
  85  0.144 -1.439  1.200  0.011 -0.103  0.080   0.1359150338
  97  0.151 -1.439  1.200  0.011 -0.103  0.080   0.1359105495
  98  0.149 -1.439  1.200  0.011 -0.103  0.080   0.1359064688
  99  0.148 -1.439  1.200  0.011 -0.103  0.080   0.1359061504
 107  0.148 -1.462  1.200  0.011 -0.103  0.080   0.1354371527
 109  0.148 -1.526  1.200  0.011 -0.103  0.080   0.1348476725
 110  0.148 -1.545  1.200  0.011 -0.103  0.080   0.1346955371
 111  0.148 -1.577  1.200  0.011 -0.103  0.080   0.1345269131
 113  0.148 -1.565  1.200  0.011 -0.103  0.080   0.1345157736
 114  0.148 -1.570  1.200  0.011 -0.103  0.080   0.1345017495
 115  0.148 -1.571  1.200  0.011 -0.103  0.080   0.1345011534
 124  0.148 -1.571  1.153  0.011 -0.103  0.080   0.1344975072
 125  0.148 -1.571  1.176  0.011 -0.103  0.080   0.1343772027
 127  0.148 -1.571  1.171  0.011 -0.103  0.080   0.1343579904
 129  0.148 -1.571  1.169  0.011 -0.103  0.080   0.1343552516
 141  0.148 -1.571  1.169  0.010 -0.103  0.080   0.1343542902
 150  0.148 -1.571  1.169  0.010 -0.131  0.080   0.1339936964
 152  0.148 -1.571  1.169  0.010 -0.132  0.080   0.1339928523
 162  0.148 -1.571  1.169  0.010 -0.132  0.045   0.1339816050
 163  0.148 -1.571  1.169  0.010 -0.132  0.062   0.1338638798
 166  0.148 -1.571  1.169  0.010 -0.132  0.064   0.1338620199
 175  0.141 -1.571  1.169  0.010 -0.132  0.064   0.1337887306
 179  0.138 -1.571  1.169  0.010 -0.132  0.064   0.1337767557
 191  0.138 -1.582  1.169  0.010 -0.132  0.064   0.1337187231
 193  0.138 -1.581  1.169  0.010 -0.132  0.064   0.1337185913
 206  0.138 -1.581  1.164  0.010 -0.132  0.064   0.1336990090
 208  0.138 -1.581  1.163  0.010 -0.132  0.064   0.1336987668
 218  0.138 -1.581  1.163  0.012 -0.132  0.064   0.1336981293
 241  0.138 -1.581  1.163  0.012 -0.132  0.048   0.1336249538
 244  0.128 -1.592  1.156  0.014 -0.132  0.033   0.1335438535
 251  0.129 -1.591  1.157  0.014 -0.132  0.034   0.1335415787
 252  0.129 -1.590  1.157  0.014 -0.132  0.035   0.1335407690
 257  0.129 -1.590  1.157  0.014 -0.132  0.035   0.1335407147
 261  0.129 -1.590  1.157  0.014 -0.132  0.035   0.1335406048
 270  0.129 -1.590  1.157  0.014 -0.132  0.038   0.1335310703
 272  0.129 -1.590  1.157  0.014 -0.132  0.040   0.1335282673
 273  0.129 -1.590  1.157  0.014 -0.132  0.041   0.1335277339
 282  0.129 -1.581  1.157  0.014 -0.132  0.041   0.1334871275
 283  0.129 -1.579  1.157  0.014 -0.132  0.041   0.1334814295
 287  0.129 -1.577  1.157  0.014 -0.132  0.041   0.1334805825
 301  0.129 -1.577  1.152  0.014 -0.132  0.041   0.1334726852
 312  0.129 -1.577  1.152  0.015 -0.132  0.041   0.1334665716
 313  0.129 -1.577  1.152  0.017 -0.132  0.041   0.1334652903
 324  0.129 -1.577  1.152  0.017 -0.135  0.041   0.1334594948
 328  0.120 -1.588  1.146  0.019 -0.135  0.026   0.1334288625
 332  0.123 -1.584  1.149  0.018 -0.135  0.031   0.1334217989
 334  0.123 -1.584  1.148  0.018 -0.135  0.031   0.1334216584
 339  0.123 -1.584  1.149  0.018 -0.135  0.031   0.1334215674
 341  0.123 -1.584  1.149  0.018 -0.135  0.031   0.1334214761
 344  0.109 -1.587  1.134  0.024 -0.137  0.014   0.1333468299
 351  0.107 -1.588  1.133  0.025 -0.138  0.012   0.1333424901
 352  0.106 -1.588  1.132  0.026 -0.138  0.011   0.1333423748
 353  0.106 -1.588  1.132  0.025 -0.138  0.011   0.1333422128
 354  0.106 -1.588  1.132  0.025 -0.138  0.011   0.1333421542
 374  0.112 -1.581  1.136  0.024 -0.138  0.021   0.1333064110
 380  0.112 -1.581  1.136  0.024 -0.138  0.021   0.1333063697
 411  0.112 -1.581  1.136  0.022 -0.138  0.021   0.1332996639
 421  0.112 -1.581  1.136  0.022 -0.137  0.021   0.1332967946
 422  0.112 -1.581  1.136  0.022 -0.135  0.021   0.1332967036
 430  0.107 -1.582  1.131  0.025 -0.136  0.014   0.1332811809
 431  0.106 -1.582  1.130  0.025 -0.136  0.013   0.1332794866
 434  0.106 -1.582  1.130  0.025 -0.136  0.013   0.1332792467
 451  0.106 -1.582  1.130  0.025 -0.136  0.011   0.1332780862
 459  0.108 -1.579  1.131  0.025 -0.136  0.015   0.1332721868
 460  0.108 -1.580  1.131  0.025 -0.136  0.015   0.1332718205
 461  0.108 -1.580  1.131  0.025 -0.136  0.014   0.1332717118
 470  0.108 -1.580  1.131  0.025 -0.136  0.014   0.1332716711
 482  0.108 -1.580  1.139  0.025 -0.136  0.014   0.1332685167
 483  0.108 -1.580  1.135  0.025 -0.136  0.014   0.1332621981
 494  0.108 -1.580  1.135  0.022 -0.136  0.014   0.1332613604
 496  0.108 -1.580  1.135  0.023 -0.136  0.014   0.1332588580
 508  0.108 -1.580  1.135  0.023 -0.137  0.014   0.1332585011
 514  0.102 -1.581  1.130  0.025 -0.138  0.008   0.1332576465
 515  0.105 -1.581  1.133  0.024 -0.138  0.011   0.1332523634
 516  0.105 -1.581  1.133  0.024 -0.138  0.011   0.1332522537
 518  0.105 -1.581  1.133  0.024 -0.138  0.011   0.1332522008
 526  0.105 -1.579  1.136  0.023 -0.139  0.009   0.1332483876
 586  0.106 -1.580  1.136  0.023 -0.135  0.013   0.1332471225
 587  0.106 -1.580  1.136  0.023 -0.136  0.013   0.1332467187
 594  0.103 -1.581  1.133  0.024 -0.137  0.010   0.1332410557
Powell done niters = 6
Computing relative cost
 0  -25.0 -25.0 -25.0   0.987108
 1  -25.0 -25.0  25.0   1.009174
 2  -25.0  25.0 -25.0   0.994077
 3  -25.0  25.0  25.0   1.024224
 4   25.0 -25.0 -25.0   1.032857
 5   25.0 -25.0  25.0   1.005481
 6   25.0  25.0 -25.0   0.980632
 7   25.0  25.0  25.0   1.024402
REL:  8  0.133241    8.057954  1.007244 rel = 0.132283 
Number of iterations     6
Min cost was 0.133241
Number of FunctionCalls   602
TolPowell 0.000100
nMaxItersPowell 36
OptimizationTime 1.771000 sec
Parameters at optimum (transmm)  0.10308 -1.58084  1.13322
Parameters at optimum (rotdeg)  0.02365 -0.13659  0.00979 
Final costs ----------------
Number of surface hits 3047
WM  Intensity    56.4536 +/-   7.1833
Ctx Intensity    67.5397 +/-   7.6173
Pct Contrast     17.8999 +/-  12.3774
Cost   0.1332
RelCost   0.4855
Reg at min cost was 
 0.999  -0.029  -0.023   0.034;
 0.022  -0.039   0.999   0.608;
-0.030  -0.999  -0.039  -0.487;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat, type = 14 
Original Reg 
 0.999  -0.032  -0.023  -0.073;
 0.022  -0.040   0.999   2.189;
-0.033  -0.999  -0.039  -1.621;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000  -0.002   0.000  -0.107;
-0.000  -0.000  -0.000   1.580;
-0.002   0.000  -0.000  -1.134;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 1.928128
Computing change in rh position
Surface RMS Diff (mm) 1.965314 2.053568
mri_segreg done
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake6
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat
subject sub016
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376990004
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.999  -0.029  -0.023   0.034;
 0.022  -0.039   0.999   0.608;
-0.030  -0.999  -0.039  -0.487;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   1.013674
 1  -25.0 -25.0  25.0   0.994273
 2  -25.0  25.0 -25.0   0.995462
 3  -25.0  25.0  25.0   1.013802
 4   25.0 -25.0 -25.0   1.027246
 5   25.0 -25.0  25.0   1.007479
 6   25.0  25.0 -25.0   0.998557
 7   25.0  25.0  25.0   1.024932
REL:  8  0.141688    8.075426  1.009428 rel = 0.140364 
Initial costs ----------------
Number of surface hits 304481
WM  Intensity    56.5409 +/-   7.1624
Ctx Intensity    67.6348 +/-   7.7629
Pct Contrast     17.8592 +/-  12.5660
Cost   0.1417
RelCost   0.1404

------------------------------------
Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1471   0.1471  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1459   0.1459  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1439   0.1439  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1434   0.1434  0.0
    13  -0.1000  -0.1000  -0.1000   0.0000   0.0000   0.0000      0.1426   0.1426  0.0
    22  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1399   0.1399  0.0
    39  -0.1000  -0.1000   0.0000   0.0000   0.0000  -0.1000      0.1396   0.1396  0.0
    40  -0.1000  -0.1000   0.0000   0.0000   0.0000   0.0000      0.1377   0.1377  0.0
    49  -0.1000  -0.1000   0.0000   0.1000   0.0000   0.0000      0.1362   0.1362  0.0
    67  -0.1000  -0.1000   0.1000   0.0000   0.0000   0.0000      0.1344   0.1344  0.0
   130  -0.1000   0.0000   0.0000   0.1000   0.0000   0.0000      0.1344   0.1344  0.0
   148  -0.1000   0.0000   0.1000   0.0000   0.0000   0.0000      0.1342   0.1342  0.0
   157  -0.1000   0.0000   0.1000   0.1000   0.0000   0.0000      0.1342   0.1342  0.0
   211  -0.1000   0.1000   0.0000   0.1000   0.0000   0.0000      0.1332   0.1332  0.0
Brute Force --------------------------
Min cost was 0.133165
Number of iterations   729
Search time 2.128000 sec
Parameters at best (transmm, rotdeg)
 -0.100   0.100   0.000  0.100  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 -0.1
1 0.1
2 0
3 0.1
4 0
5 0
   7 -0.040  0.100  0.000  0.100  0.000  0.000   0.1383786066
   8 -0.060  0.100  0.000  0.100  0.000  0.000   0.1383350291
  10 -0.059  0.100  0.000  0.100  0.000  0.000   0.1383349480
  19 -0.059  0.196  0.000  0.100  0.000  0.000   0.1372708911
  28 -0.059  0.196  0.126  0.100  0.000  0.000   0.1360247476
  29 -0.059  0.196  0.120  0.100  0.000  0.000   0.1360163550
  30 -0.059  0.196  0.116  0.100  0.000  0.000   0.1360147204
  39 -0.059  0.196  0.116  0.051  0.000  0.000   0.1354389563
  40 -0.059  0.196  0.116  0.044  0.000  0.000   0.1354184637
  41 -0.059  0.196  0.116  0.038  0.000  0.000   0.1354155472
  42 -0.059  0.196  0.116  0.040  0.000  0.000   0.1354152911
  50 -0.059  0.196  0.116  0.040 -0.061  0.000   0.1348322987
  52 -0.059  0.196  0.116  0.040 -0.065  0.000   0.1348295650
  53 -0.059  0.196  0.116  0.040 -0.064  0.000   0.1348295083
  61 -0.059  0.196  0.116  0.040 -0.064  0.015   0.1348115263
  62 -0.059  0.196  0.116  0.040 -0.064  0.013   0.1348100653
  63 -0.059  0.196  0.116  0.040 -0.064  0.012   0.1348097944
  72 -0.023  0.196  0.116  0.040 -0.064  0.012   0.1347987256
  73 -0.039  0.196  0.116  0.040 -0.064  0.012   0.1347666581
  83 -0.039  0.189  0.116  0.040 -0.064  0.012   0.1347613712
  92 -0.039  0.189  0.182  0.040 -0.064  0.012   0.1345687690
  93 -0.039  0.189  0.167  0.040 -0.064  0.012   0.1345484474
  95 -0.039  0.189  0.162  0.040 -0.064  0.012   0.1345484171
  97 -0.039  0.189  0.164  0.040 -0.064  0.012   0.1345479816
 106 -0.039  0.189  0.164  0.026 -0.064  0.012   0.1344668773
 107 -0.039  0.189  0.164  0.016 -0.064  0.012   0.1344402774
 108 -0.039  0.189  0.164  0.012 -0.064  0.012   0.1344367260
 117 -0.039  0.189  0.164  0.012 -0.067  0.012   0.1344335818
 118 -0.039  0.189  0.164  0.012 -0.071  0.012   0.1344296615
 120 -0.039  0.189  0.164  0.012 -0.076  0.012   0.1344282299
 122 -0.039  0.189  0.164  0.012 -0.075  0.012   0.1344281565
 130 -0.039  0.189  0.164  0.012 -0.075  0.026   0.1344084441
 131 -0.039  0.189  0.164  0.012 -0.075  0.025   0.1344074875
 132 -0.039  0.189  0.164  0.012 -0.075  0.023   0.1344071491
 134 -0.019  0.182  0.212 -0.015 -0.085  0.035   0.1343182007
 140 -0.027  0.185  0.194 -0.005 -0.081  0.030   0.1343139430
 141 -0.024  0.184  0.201 -0.009 -0.083  0.032   0.1343115115
 142 -0.024  0.184  0.201 -0.009 -0.082  0.032   0.1343114196
 144 -0.024  0.184  0.200 -0.009 -0.082  0.032   0.1343114161
 145 -0.024  0.184  0.201 -0.009 -0.082  0.032   0.1343113993
 146 -0.024  0.184  0.201 -0.009 -0.082  0.032   0.1343113763
 156 -0.023  0.184  0.201 -0.009 -0.082  0.032   0.1343113219
 165 -0.023  0.168  0.201 -0.009 -0.082  0.032   0.1342921102
 168 -0.023  0.169  0.201 -0.009 -0.082  0.032   0.1342919357
 186 -0.023  0.169  0.201 -0.010 -0.082  0.032   0.1342918736
 194 -0.023  0.169  0.201 -0.010 -0.077  0.032   0.1342895233
 196 -0.023  0.169  0.201 -0.010 -0.076  0.032   0.1342893447
 204 -0.016  0.167  0.219 -0.020 -0.080  0.036   0.1342801141
 205 -0.017  0.167  0.215 -0.018 -0.079  0.035   0.1342795104
 206 -0.017  0.167  0.215 -0.018 -0.079  0.035   0.1342794935
 207 -0.017  0.167  0.215 -0.018 -0.079  0.035   0.1342794915
 208 -0.017  0.167  0.215 -0.018 -0.079  0.035   0.1342794695
 220 -0.018  0.167  0.215 -0.018 -0.079  0.035   0.1342793241
 228 -0.018  0.166  0.215 -0.018 -0.079  0.035   0.1342780381
 229 -0.018  0.163  0.215 -0.018 -0.079  0.035   0.1342773814
 231 -0.018  0.164  0.215 -0.018 -0.079  0.035   0.1342773395
 240 -0.018  0.164  0.215 -0.018 -0.079  0.034   0.1342769522
 251 -0.018  0.164  0.215 -0.014 -0.079  0.034   0.1342747860
 269 -0.017  0.163  0.219 -0.016 -0.080  0.035   0.1342731830
 270 -0.016  0.163  0.220 -0.017 -0.080  0.035   0.1342730505
 271 -0.016  0.163  0.220 -0.017 -0.080  0.035   0.1342730021
 274 -0.016  0.163  0.221 -0.017 -0.080  0.036   0.1342729395
 288 -0.018  0.163  0.221 -0.017 -0.080  0.036   0.1342724065
 306 -0.018  0.163  0.221 -0.017 -0.080  0.034   0.1342722990
 307 -0.018  0.163  0.221 -0.017 -0.080  0.033   0.1342721992
 321 -0.018  0.163  0.221 -0.016 -0.080  0.033   0.1342720073
 330 -0.018  0.163  0.221 -0.016 -0.078  0.033   0.1342712016
 341 -0.018  0.163  0.222 -0.017 -0.078  0.033   0.1342711738
 344 -0.018  0.163  0.222 -0.017 -0.078  0.033   0.1342711728
 357 -0.020  0.163  0.222 -0.017 -0.078  0.033   0.1342708052
 366 -0.020  0.164  0.222 -0.017 -0.078  0.033   0.1342707798
 375 -0.020  0.164  0.222 -0.017 -0.078  0.032   0.1342707229
 384 -0.020  0.164  0.222 -0.016 -0.078  0.032   0.1342706602
 393 -0.020  0.164  0.222 -0.016 -0.077  0.032   0.1342704408
 417 -0.021  0.164  0.222 -0.016 -0.077  0.032   0.1342703886
 454 -0.021  0.164  0.222 -0.016 -0.076  0.032   0.1342703700
 466 -0.021  0.164  0.222 -0.016 -0.076  0.032   0.1342703523
Powell done niters = 7
Computing relative cost
 0  -25.0 -25.0 -25.0   1.014724
 1  -25.0 -25.0  25.0   0.993885
 2  -25.0  25.0 -25.0   0.993645
 3  -25.0  25.0  25.0   1.012720
 4   25.0 -25.0 -25.0   1.028029
 5   25.0 -25.0  25.0   1.005782
 6   25.0  25.0 -25.0   0.999341
 7   25.0  25.0  25.0   1.024793
REL:  8  0.134270    8.072920  1.009115 rel = 0.133058 
Number of iterations     7
Min cost was 0.134270
Number of FunctionCalls   527
TolPowell 0.000000
nMaxItersPowell 36
OptimizationTime 69.051000 sec
Parameters at optimum (transmm) -0.02074  0.16374  0.22181
Parameters at optimum (rotdeg) -0.01581 -0.07641  0.03234 
Final costs ----------------
Number of surface hits 304481
WM  Intensity    56.5318 +/-   7.1402
Ctx Intensity    67.5968 +/-   7.7119
Pct Contrast     17.8233 +/-  12.4061
Cost   0.1343
RelCost   0.1404
Reg at min cost was 
 0.999  -0.028  -0.023   0.013;
 0.022  -0.040   0.999   0.772;
-0.029  -0.999  -0.039  -0.265;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat, type = 14 
Original Reg 
 0.999  -0.029  -0.023   0.034;
 0.022  -0.039   0.999   0.608;
-0.030  -0.999  -0.039  -0.487;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000  -0.001   0.001   0.020;
-0.001   0.000   0.000  -0.164;
-0.001   0.000   0.000  -0.222;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 0.244708
Computing change in rh position
Surface RMS Diff (mm) 0.284066 0.379271
mri_segreg done
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.lta
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
---- Input registration matrix --------
 0.999  -0.028  -0.023   0.013;
 0.022  -0.040   0.999   0.772;
-0.029  -0.999  -0.039  -0.265;
 0.000   0.000   0.000   1.000;
float2int = 0
---------------------------------------
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz
Tmov: --------------------
-0.700   0.000   0.000   95.886;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
---- Input registration matrix --------
 0.999  -0.028  -0.023   0.013;
 0.022  -0.040   0.999   0.772;
-0.029  -0.999  -0.039  -0.265;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub016
RegMat ---------------------------
 0.999  -0.028  -0.023   0.013;
 0.022  -0.040   0.999   0.772;
-0.029  -0.999  -0.039  -0.265;
 0.000   0.000   0.000   1.000;
transformed matrix:
 1.000  -0.003  -0.000   0.059;
 0.003   1.000   0.006  -0.142;
 0.000  -0.006   1.000  -0.599;
 0.000   0.000   0.000   1.000;
transformed matrix:
 0.699  -0.019  -0.015   38.752;
-0.016  -0.026  -0.666   263.892;
 0.020   0.666  -0.026   2.326;
 0.000   0.000   0.000   1.000;
Cleaning up
 
Started at Thu Aug 8 23:21:39 CEST 2013 
Ended   at Thu Aug  8 23:33:58 CEST 2013
BBR-Run-Time-Sec 739
 
bbregister Done
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --surf