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- Logfile for bbregister
- Thu Aug 8 23:21:40 CEST 2013
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- /opt/freesurfer/5.3.0/bin/bbregister --s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.lta --init-fsl --T2
- $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
- Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- FREESURFER_HOME /opt/freesurfer/5.3.0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.999248, 0.0307568, 0.0236215)
- j_ras = (0.0317878, 0.9985, 0.0445881)
- k_ras = (0.0222147, -0.0453054, 0.998726)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii...
- fslregister --s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister --dof 6 --fsvol brainmask.mgz
- Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fslregister.log
- Thu Aug 8 23:21:45 CEST 2013
- --s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister --dof 6 --fsvol brainmask.mgz
- $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
- snake6
- Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- nIters 1
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/brainmask.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 1.86265e-09, 3.72529e-09)
- j_ras = (1.86265e-09, 0, -1)
- k_ras = (-1.97906e-09, 1, -3.72529e-09)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii...
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii --frame 0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii --frame 0
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.999248, 0.0307568, 0.0236215)
- j_ras = (0.0317878, 0.9985, 0.0445881)
- k_ras = (0.0222147, -0.0453054, 0.998726)
- keeping frame 0
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii...
- Mov determinant is -0.311066
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/reg0.24460.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat0 --s sub016 --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/reg0.24460.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.886;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 1, float2int = 0
- Computing reg from header (and possibly input matrix)
- ---- Input registration matrix (computed) --------
- 0.999 -0.031 -0.024 -0.000;
- 0.022 -0.045 0.999 -0.000;
- -0.032 -0.998 -0.045 -0.000;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.999 -0.031 -0.024 -0.000;
- 0.022 -0.045 0.999 -0.000;
- -0.032 -0.998 -0.045 -0.000;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub016
- RegMat ---------------------------
- 0.999 -0.031 -0.024 -0.000;
- 0.022 -0.045 0.999 -0.000;
- -0.032 -0.998 -0.045 -0.000;
- 0.000 0.000 0.000 1.000;
- FSLOUTPUTTYPE NIFTI
- tkreg2FSL: mov det = -0.311066, ref det = -1
- Thu Aug 8 23:21:54 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat0
- Thu Aug 8 23:26:14 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
- tkregister2_cmdl --s sub016 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat.fsl.mat --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- ---- FSL registration matrix --------
- 0.999 -0.033 -0.022 39.132;
- -0.023 -0.039 -0.999 265.314;
- 0.032 0.999 -0.040 0.697;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.886;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- FSLOUTPUTTYPE NIFTI
- fsl2TkReg: mov det = -0.311066, ref det = -1
- ---- Input registration matrix (computed) --------
- 0.999 -0.032 -0.023 -0.073;
- 0.022 -0.040 0.999 2.189;
- -0.033 -0.999 -0.039 -1.621;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.999 -0.032 -0.023 -0.073;
- 0.022 -0.040 0.999 2.189;
- -0.033 -0.999 -0.039 -1.621;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub016
- RegMat ---------------------------
- 0.999 -0.032 -0.023 -0.073;
- 0.022 -0.040 0.999 2.189;
- -0.033 -0.999 -0.039 -1.621;
- 0.000 0.000 0.000 1.000;
-
- Started at Thu Aug 8 23:21:45 CEST 2013
- Ended at Thu Aug 8 23:31:55 CEST 2013
-
- fslregister Done
-
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --surf orig
-
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- sysname Linux
- hostname snake6
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.init.dat
- subject sub016
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 100
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000100
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376727398
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.032 -0.023 -0.073;
- 0.022 -0.040 0.999 2.189;
- -0.033 -0.999 -0.039 -1.621;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.991698
- 1 -25.0 -25.0 25.0 1.017919
- 2 -25.0 25.0 -25.0 1.014961
- 3 -25.0 25.0 25.0 1.012154
- 4 25.0 -25.0 -25.0 1.053511
- 5 25.0 -25.0 25.0 1.038265
- 6 25.0 25.0 -25.0 1.025332
- 7 25.0 25.0 25.0 1.040335
- REL: 8 0.497330 8.194174 1.024272 rel = 0.485545
- Initial costs ----------------
- Number of surface hits 3047
- WM Intensity 58.1412 +/- 8.4125
- Ctx Intensity 68.1580 +/- 13.9941
- Pct Contrast 14.7458 +/- 22.3937
- Cost 0.4973
- RelCost 0.4855
- ------------------------------------
- Brute force preopt -4 4 4, n = 729
- 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9706 0.9706 0.0
- 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9683 0.9683 0.0
- 3 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.9651 0.9651 0.0
- 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8698 0.8698 0.0
- 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8503 0.8503 0.0
- 39 -4.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.8111 0.8111 0.0
- 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7265 0.7265 0.0
- 346 0.0000 0.0000 -4.0000 4.0000 0.0000 0.0000 0.7237 0.7237 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4973 0.4973 0.0
- Brute Force --------------------------
- Min cost was 0.497330
- Number of iterations 729
- Search time 2.336000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 7 0.058 0.000 0.000 0.000 0.000 0.000 0.4962479741
- 8 0.173 0.000 0.000 0.000 0.000 0.000 0.4956493570
- 9 0.150 0.000 0.000 0.000 0.000 0.000 0.4954339777
- 11 0.148 0.000 0.000 0.000 0.000 0.000 0.4954213621
- 12 0.144 0.000 0.000 0.000 0.000 0.000 0.4954030878
- 18 0.144 -1.618 0.000 0.000 0.000 0.000 0.3123496406
- 23 0.144 -1.481 0.000 0.000 0.000 0.000 0.3072172974
- 24 0.144 -1.427 0.000 0.000 0.000 0.000 0.3064682236
- 26 0.144 -1.443 0.000 0.000 0.000 0.000 0.3063398337
- 27 0.144 -1.442 0.000 0.000 0.000 0.000 0.3063332070
- 28 0.144 -1.439 0.000 0.000 0.000 0.000 0.3063242057
- 33 0.144 -1.439 1.000 0.000 0.000 0.000 0.1447468946
- 38 0.144 -1.439 1.258 0.000 0.000 0.000 0.1406853989
- 39 0.144 -1.439 1.242 0.000 0.000 0.000 0.1403118087
- 40 0.144 -1.439 1.178 0.000 0.000 0.000 0.1399896185
- 42 0.144 -1.439 1.199 0.000 0.000 0.000 0.1397496399
- 44 0.144 -1.439 1.200 0.000 0.000 0.000 0.1397479461
- 57 0.144 -1.439 1.200 0.009 0.000 0.000 0.1395871869
- 58 0.144 -1.439 1.200 0.011 0.000 0.000 0.1395814210
- 67 0.144 -1.439 1.200 0.011 -0.164 0.000 0.1379313531
- 68 0.144 -1.439 1.200 0.011 -0.132 0.000 0.1376534846
- 69 0.144 -1.439 1.200 0.011 -0.118 0.000 0.1373763056
- 71 0.144 -1.439 1.200 0.011 -0.103 0.000 0.1372832564
- 80 0.144 -1.439 1.200 0.011 -0.103 0.119 0.1361960394
- 81 0.144 -1.439 1.200 0.011 -0.103 0.101 0.1360196246
- 82 0.144 -1.439 1.200 0.011 -0.103 0.083 0.1359179116
- 84 0.144 -1.439 1.200 0.011 -0.103 0.079 0.1359153918
- 85 0.144 -1.439 1.200 0.011 -0.103 0.080 0.1359150338
- 97 0.151 -1.439 1.200 0.011 -0.103 0.080 0.1359105495
- 98 0.149 -1.439 1.200 0.011 -0.103 0.080 0.1359064688
- 99 0.148 -1.439 1.200 0.011 -0.103 0.080 0.1359061504
- 107 0.148 -1.462 1.200 0.011 -0.103 0.080 0.1354371527
- 109 0.148 -1.526 1.200 0.011 -0.103 0.080 0.1348476725
- 110 0.148 -1.545 1.200 0.011 -0.103 0.080 0.1346955371
- 111 0.148 -1.577 1.200 0.011 -0.103 0.080 0.1345269131
- 113 0.148 -1.565 1.200 0.011 -0.103 0.080 0.1345157736
- 114 0.148 -1.570 1.200 0.011 -0.103 0.080 0.1345017495
- 115 0.148 -1.571 1.200 0.011 -0.103 0.080 0.1345011534
- 124 0.148 -1.571 1.153 0.011 -0.103 0.080 0.1344975072
- 125 0.148 -1.571 1.176 0.011 -0.103 0.080 0.1343772027
- 127 0.148 -1.571 1.171 0.011 -0.103 0.080 0.1343579904
- 129 0.148 -1.571 1.169 0.011 -0.103 0.080 0.1343552516
- 141 0.148 -1.571 1.169 0.010 -0.103 0.080 0.1343542902
- 150 0.148 -1.571 1.169 0.010 -0.131 0.080 0.1339936964
- 152 0.148 -1.571 1.169 0.010 -0.132 0.080 0.1339928523
- 162 0.148 -1.571 1.169 0.010 -0.132 0.045 0.1339816050
- 163 0.148 -1.571 1.169 0.010 -0.132 0.062 0.1338638798
- 166 0.148 -1.571 1.169 0.010 -0.132 0.064 0.1338620199
- 175 0.141 -1.571 1.169 0.010 -0.132 0.064 0.1337887306
- 179 0.138 -1.571 1.169 0.010 -0.132 0.064 0.1337767557
- 191 0.138 -1.582 1.169 0.010 -0.132 0.064 0.1337187231
- 193 0.138 -1.581 1.169 0.010 -0.132 0.064 0.1337185913
- 206 0.138 -1.581 1.164 0.010 -0.132 0.064 0.1336990090
- 208 0.138 -1.581 1.163 0.010 -0.132 0.064 0.1336987668
- 218 0.138 -1.581 1.163 0.012 -0.132 0.064 0.1336981293
- 241 0.138 -1.581 1.163 0.012 -0.132 0.048 0.1336249538
- 244 0.128 -1.592 1.156 0.014 -0.132 0.033 0.1335438535
- 251 0.129 -1.591 1.157 0.014 -0.132 0.034 0.1335415787
- 252 0.129 -1.590 1.157 0.014 -0.132 0.035 0.1335407690
- 257 0.129 -1.590 1.157 0.014 -0.132 0.035 0.1335407147
- 261 0.129 -1.590 1.157 0.014 -0.132 0.035 0.1335406048
- 270 0.129 -1.590 1.157 0.014 -0.132 0.038 0.1335310703
- 272 0.129 -1.590 1.157 0.014 -0.132 0.040 0.1335282673
- 273 0.129 -1.590 1.157 0.014 -0.132 0.041 0.1335277339
- 282 0.129 -1.581 1.157 0.014 -0.132 0.041 0.1334871275
- 283 0.129 -1.579 1.157 0.014 -0.132 0.041 0.1334814295
- 287 0.129 -1.577 1.157 0.014 -0.132 0.041 0.1334805825
- 301 0.129 -1.577 1.152 0.014 -0.132 0.041 0.1334726852
- 312 0.129 -1.577 1.152 0.015 -0.132 0.041 0.1334665716
- 313 0.129 -1.577 1.152 0.017 -0.132 0.041 0.1334652903
- 324 0.129 -1.577 1.152 0.017 -0.135 0.041 0.1334594948
- 328 0.120 -1.588 1.146 0.019 -0.135 0.026 0.1334288625
- 332 0.123 -1.584 1.149 0.018 -0.135 0.031 0.1334217989
- 334 0.123 -1.584 1.148 0.018 -0.135 0.031 0.1334216584
- 339 0.123 -1.584 1.149 0.018 -0.135 0.031 0.1334215674
- 341 0.123 -1.584 1.149 0.018 -0.135 0.031 0.1334214761
- 344 0.109 -1.587 1.134 0.024 -0.137 0.014 0.1333468299
- 351 0.107 -1.588 1.133 0.025 -0.138 0.012 0.1333424901
- 352 0.106 -1.588 1.132 0.026 -0.138 0.011 0.1333423748
- 353 0.106 -1.588 1.132 0.025 -0.138 0.011 0.1333422128
- 354 0.106 -1.588 1.132 0.025 -0.138 0.011 0.1333421542
- 374 0.112 -1.581 1.136 0.024 -0.138 0.021 0.1333064110
- 380 0.112 -1.581 1.136 0.024 -0.138 0.021 0.1333063697
- 411 0.112 -1.581 1.136 0.022 -0.138 0.021 0.1332996639
- 421 0.112 -1.581 1.136 0.022 -0.137 0.021 0.1332967946
- 422 0.112 -1.581 1.136 0.022 -0.135 0.021 0.1332967036
- 430 0.107 -1.582 1.131 0.025 -0.136 0.014 0.1332811809
- 431 0.106 -1.582 1.130 0.025 -0.136 0.013 0.1332794866
- 434 0.106 -1.582 1.130 0.025 -0.136 0.013 0.1332792467
- 451 0.106 -1.582 1.130 0.025 -0.136 0.011 0.1332780862
- 459 0.108 -1.579 1.131 0.025 -0.136 0.015 0.1332721868
- 460 0.108 -1.580 1.131 0.025 -0.136 0.015 0.1332718205
- 461 0.108 -1.580 1.131 0.025 -0.136 0.014 0.1332717118
- 470 0.108 -1.580 1.131 0.025 -0.136 0.014 0.1332716711
- 482 0.108 -1.580 1.139 0.025 -0.136 0.014 0.1332685167
- 483 0.108 -1.580 1.135 0.025 -0.136 0.014 0.1332621981
- 494 0.108 -1.580 1.135 0.022 -0.136 0.014 0.1332613604
- 496 0.108 -1.580 1.135 0.023 -0.136 0.014 0.1332588580
- 508 0.108 -1.580 1.135 0.023 -0.137 0.014 0.1332585011
- 514 0.102 -1.581 1.130 0.025 -0.138 0.008 0.1332576465
- 515 0.105 -1.581 1.133 0.024 -0.138 0.011 0.1332523634
- 516 0.105 -1.581 1.133 0.024 -0.138 0.011 0.1332522537
- 518 0.105 -1.581 1.133 0.024 -0.138 0.011 0.1332522008
- 526 0.105 -1.579 1.136 0.023 -0.139 0.009 0.1332483876
- 586 0.106 -1.580 1.136 0.023 -0.135 0.013 0.1332471225
- 587 0.106 -1.580 1.136 0.023 -0.136 0.013 0.1332467187
- 594 0.103 -1.581 1.133 0.024 -0.137 0.010 0.1332410557
- Powell done niters = 6
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.987108
- 1 -25.0 -25.0 25.0 1.009174
- 2 -25.0 25.0 -25.0 0.994077
- 3 -25.0 25.0 25.0 1.024224
- 4 25.0 -25.0 -25.0 1.032857
- 5 25.0 -25.0 25.0 1.005481
- 6 25.0 25.0 -25.0 0.980632
- 7 25.0 25.0 25.0 1.024402
- REL: 8 0.133241 8.057954 1.007244 rel = 0.132283
- Number of iterations 6
- Min cost was 0.133241
- Number of FunctionCalls 602
- TolPowell 0.000100
- nMaxItersPowell 36
- OptimizationTime 1.771000 sec
- Parameters at optimum (transmm) 0.10308 -1.58084 1.13322
- Parameters at optimum (rotdeg) 0.02365 -0.13659 0.00979
- Final costs ----------------
- Number of surface hits 3047
- WM Intensity 56.4536 +/- 7.1833
- Ctx Intensity 67.5397 +/- 7.6173
- Pct Contrast 17.8999 +/- 12.3774
- Cost 0.1332
- RelCost 0.4855
- Reg at min cost was
- 0.999 -0.029 -0.023 0.034;
- 0.022 -0.039 0.999 0.608;
- -0.030 -0.999 -0.039 -0.487;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat, type = 14
- Original Reg
- 0.999 -0.032 -0.023 -0.073;
- 0.022 -0.040 0.999 2.189;
- -0.033 -0.999 -0.039 -1.621;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 -0.002 0.000 -0.107;
- -0.000 -0.000 -0.000 1.580;
- -0.002 0.000 -0.000 -1.134;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 1.928128
- Computing change in rh position
- Surface RMS Diff (mm) 1.965314 2.053568
- mri_segreg done
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake6
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/tmp.bbregister.24421/bbr.pass1.dat
- subject sub016
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376990004
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.029 -0.023 0.034;
- 0.022 -0.039 0.999 0.608;
- -0.030 -0.999 -0.039 -0.487;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.013674
- 1 -25.0 -25.0 25.0 0.994273
- 2 -25.0 25.0 -25.0 0.995462
- 3 -25.0 25.0 25.0 1.013802
- 4 25.0 -25.0 -25.0 1.027246
- 5 25.0 -25.0 25.0 1.007479
- 6 25.0 25.0 -25.0 0.998557
- 7 25.0 25.0 25.0 1.024932
- REL: 8 0.141688 8.075426 1.009428 rel = 0.140364
- Initial costs ----------------
- Number of surface hits 304481
- WM Intensity 56.5409 +/- 7.1624
- Ctx Intensity 67.6348 +/- 7.7629
- Pct Contrast 17.8592 +/- 12.5660
- Cost 0.1417
- RelCost 0.1404
- ------------------------------------
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1471 0.1471 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1459 0.1459 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1439 0.1439 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1434 0.1434 0.0
- 13 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.1426 0.1426 0.0
- 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1399 0.1399 0.0
- 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.1396 0.1396 0.0
- 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1377 0.1377 0.0
- 49 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1362 0.1362 0.0
- 67 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.0000 0.1344 0.1344 0.0
- 130 -0.1000 0.0000 0.0000 0.1000 0.0000 0.0000 0.1344 0.1344 0.0
- 148 -0.1000 0.0000 0.1000 0.0000 0.0000 0.0000 0.1342 0.1342 0.0
- 157 -0.1000 0.0000 0.1000 0.1000 0.0000 0.0000 0.1342 0.1342 0.0
- 211 -0.1000 0.1000 0.0000 0.1000 0.0000 0.0000 0.1332 0.1332 0.0
- Brute Force --------------------------
- Min cost was 0.133165
- Number of iterations 729
- Search time 2.128000 sec
- Parameters at best (transmm, rotdeg)
- -0.100 0.100 0.000 0.100 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 -0.1
- 1 0.1
- 2 0
- 3 0.1
- 4 0
- 5 0
- 7 -0.040 0.100 0.000 0.100 0.000 0.000 0.1383786066
- 8 -0.060 0.100 0.000 0.100 0.000 0.000 0.1383350291
- 10 -0.059 0.100 0.000 0.100 0.000 0.000 0.1383349480
- 19 -0.059 0.196 0.000 0.100 0.000 0.000 0.1372708911
- 28 -0.059 0.196 0.126 0.100 0.000 0.000 0.1360247476
- 29 -0.059 0.196 0.120 0.100 0.000 0.000 0.1360163550
- 30 -0.059 0.196 0.116 0.100 0.000 0.000 0.1360147204
- 39 -0.059 0.196 0.116 0.051 0.000 0.000 0.1354389563
- 40 -0.059 0.196 0.116 0.044 0.000 0.000 0.1354184637
- 41 -0.059 0.196 0.116 0.038 0.000 0.000 0.1354155472
- 42 -0.059 0.196 0.116 0.040 0.000 0.000 0.1354152911
- 50 -0.059 0.196 0.116 0.040 -0.061 0.000 0.1348322987
- 52 -0.059 0.196 0.116 0.040 -0.065 0.000 0.1348295650
- 53 -0.059 0.196 0.116 0.040 -0.064 0.000 0.1348295083
- 61 -0.059 0.196 0.116 0.040 -0.064 0.015 0.1348115263
- 62 -0.059 0.196 0.116 0.040 -0.064 0.013 0.1348100653
- 63 -0.059 0.196 0.116 0.040 -0.064 0.012 0.1348097944
- 72 -0.023 0.196 0.116 0.040 -0.064 0.012 0.1347987256
- 73 -0.039 0.196 0.116 0.040 -0.064 0.012 0.1347666581
- 83 -0.039 0.189 0.116 0.040 -0.064 0.012 0.1347613712
- 92 -0.039 0.189 0.182 0.040 -0.064 0.012 0.1345687690
- 93 -0.039 0.189 0.167 0.040 -0.064 0.012 0.1345484474
- 95 -0.039 0.189 0.162 0.040 -0.064 0.012 0.1345484171
- 97 -0.039 0.189 0.164 0.040 -0.064 0.012 0.1345479816
- 106 -0.039 0.189 0.164 0.026 -0.064 0.012 0.1344668773
- 107 -0.039 0.189 0.164 0.016 -0.064 0.012 0.1344402774
- 108 -0.039 0.189 0.164 0.012 -0.064 0.012 0.1344367260
- 117 -0.039 0.189 0.164 0.012 -0.067 0.012 0.1344335818
- 118 -0.039 0.189 0.164 0.012 -0.071 0.012 0.1344296615
- 120 -0.039 0.189 0.164 0.012 -0.076 0.012 0.1344282299
- 122 -0.039 0.189 0.164 0.012 -0.075 0.012 0.1344281565
- 130 -0.039 0.189 0.164 0.012 -0.075 0.026 0.1344084441
- 131 -0.039 0.189 0.164 0.012 -0.075 0.025 0.1344074875
- 132 -0.039 0.189 0.164 0.012 -0.075 0.023 0.1344071491
- 134 -0.019 0.182 0.212 -0.015 -0.085 0.035 0.1343182007
- 140 -0.027 0.185 0.194 -0.005 -0.081 0.030 0.1343139430
- 141 -0.024 0.184 0.201 -0.009 -0.083 0.032 0.1343115115
- 142 -0.024 0.184 0.201 -0.009 -0.082 0.032 0.1343114196
- 144 -0.024 0.184 0.200 -0.009 -0.082 0.032 0.1343114161
- 145 -0.024 0.184 0.201 -0.009 -0.082 0.032 0.1343113993
- 146 -0.024 0.184 0.201 -0.009 -0.082 0.032 0.1343113763
- 156 -0.023 0.184 0.201 -0.009 -0.082 0.032 0.1343113219
- 165 -0.023 0.168 0.201 -0.009 -0.082 0.032 0.1342921102
- 168 -0.023 0.169 0.201 -0.009 -0.082 0.032 0.1342919357
- 186 -0.023 0.169 0.201 -0.010 -0.082 0.032 0.1342918736
- 194 -0.023 0.169 0.201 -0.010 -0.077 0.032 0.1342895233
- 196 -0.023 0.169 0.201 -0.010 -0.076 0.032 0.1342893447
- 204 -0.016 0.167 0.219 -0.020 -0.080 0.036 0.1342801141
- 205 -0.017 0.167 0.215 -0.018 -0.079 0.035 0.1342795104
- 206 -0.017 0.167 0.215 -0.018 -0.079 0.035 0.1342794935
- 207 -0.017 0.167 0.215 -0.018 -0.079 0.035 0.1342794915
- 208 -0.017 0.167 0.215 -0.018 -0.079 0.035 0.1342794695
- 220 -0.018 0.167 0.215 -0.018 -0.079 0.035 0.1342793241
- 228 -0.018 0.166 0.215 -0.018 -0.079 0.035 0.1342780381
- 229 -0.018 0.163 0.215 -0.018 -0.079 0.035 0.1342773814
- 231 -0.018 0.164 0.215 -0.018 -0.079 0.035 0.1342773395
- 240 -0.018 0.164 0.215 -0.018 -0.079 0.034 0.1342769522
- 251 -0.018 0.164 0.215 -0.014 -0.079 0.034 0.1342747860
- 269 -0.017 0.163 0.219 -0.016 -0.080 0.035 0.1342731830
- 270 -0.016 0.163 0.220 -0.017 -0.080 0.035 0.1342730505
- 271 -0.016 0.163 0.220 -0.017 -0.080 0.035 0.1342730021
- 274 -0.016 0.163 0.221 -0.017 -0.080 0.036 0.1342729395
- 288 -0.018 0.163 0.221 -0.017 -0.080 0.036 0.1342724065
- 306 -0.018 0.163 0.221 -0.017 -0.080 0.034 0.1342722990
- 307 -0.018 0.163 0.221 -0.017 -0.080 0.033 0.1342721992
- 321 -0.018 0.163 0.221 -0.016 -0.080 0.033 0.1342720073
- 330 -0.018 0.163 0.221 -0.016 -0.078 0.033 0.1342712016
- 341 -0.018 0.163 0.222 -0.017 -0.078 0.033 0.1342711738
- 344 -0.018 0.163 0.222 -0.017 -0.078 0.033 0.1342711728
- 357 -0.020 0.163 0.222 -0.017 -0.078 0.033 0.1342708052
- 366 -0.020 0.164 0.222 -0.017 -0.078 0.033 0.1342707798
- 375 -0.020 0.164 0.222 -0.017 -0.078 0.032 0.1342707229
- 384 -0.020 0.164 0.222 -0.016 -0.078 0.032 0.1342706602
- 393 -0.020 0.164 0.222 -0.016 -0.077 0.032 0.1342704408
- 417 -0.021 0.164 0.222 -0.016 -0.077 0.032 0.1342703886
- 454 -0.021 0.164 0.222 -0.016 -0.076 0.032 0.1342703700
- 466 -0.021 0.164 0.222 -0.016 -0.076 0.032 0.1342703523
- Powell done niters = 7
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.014724
- 1 -25.0 -25.0 25.0 0.993885
- 2 -25.0 25.0 -25.0 0.993645
- 3 -25.0 25.0 25.0 1.012720
- 4 25.0 -25.0 -25.0 1.028029
- 5 25.0 -25.0 25.0 1.005782
- 6 25.0 25.0 -25.0 0.999341
- 7 25.0 25.0 25.0 1.024793
- REL: 8 0.134270 8.072920 1.009115 rel = 0.133058
- Number of iterations 7
- Min cost was 0.134270
- Number of FunctionCalls 527
- TolPowell 0.000000
- nMaxItersPowell 36
- OptimizationTime 69.051000 sec
- Parameters at optimum (transmm) -0.02074 0.16374 0.22181
- Parameters at optimum (rotdeg) -0.01581 -0.07641 0.03234
- Final costs ----------------
- Number of surface hits 304481
- WM Intensity 56.5318 +/- 7.1402
- Ctx Intensity 67.5968 +/- 7.7119
- Pct Contrast 17.8233 +/- 12.4061
- Cost 0.1343
- RelCost 0.1404
- Reg at min cost was
- 0.999 -0.028 -0.023 0.013;
- 0.022 -0.040 0.999 0.772;
- -0.029 -0.999 -0.039 -0.265;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat, type = 14
- Original Reg
- 0.999 -0.029 -0.023 0.034;
- 0.022 -0.039 0.999 0.608;
- -0.030 -0.999 -0.039 -0.487;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 -0.001 0.001 0.020;
- -0.001 0.000 0.000 -0.164;
- -0.001 0.000 0.000 -0.222;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 0.244708
- Computing change in rh position
- Surface RMS Diff (mm) 0.284066 0.379271
- mri_segreg done
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.lta
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- ---- Input registration matrix --------
- 0.999 -0.028 -0.023 0.013;
- 0.022 -0.040 0.999 0.772;
- -0.029 -0.999 -0.039 -0.265;
- 0.000 0.000 0.000 1.000;
- float2int = 0
- ---------------------------------------
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz
- Tmov: --------------------
- -0.700 0.000 0.000 95.886;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- ---- Input registration matrix --------
- 0.999 -0.028 -0.023 0.013;
- 0.022 -0.040 0.999 0.772;
- -0.029 -0.999 -0.039 -0.265;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub016
- RegMat ---------------------------
- 0.999 -0.028 -0.023 0.013;
- 0.022 -0.040 0.999 0.772;
- -0.029 -0.999 -0.039 -0.265;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 1.000 -0.003 -0.000 0.059;
- 0.003 1.000 0.006 -0.142;
- 0.000 -0.006 1.000 -0.599;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 0.699 -0.019 -0.015 38.752;
- -0.016 -0.026 -0.666 263.892;
- 0.020 0.666 -0.026 2.326;
- 0.000 0.000 0.000 1.000;
- Cleaning up
-
- Started at Thu Aug 8 23:21:39 CEST 2013
- Ended at Thu Aug 8 23:33:58 CEST 2013
- BBR-Run-Time-Sec 739
-
- bbregister Done
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016/mri/transforms/T2raw.dat --surf
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