cortical-surfaces-freesurfer/sub-13/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake4
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat
subject sub013
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376409012
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.996  -0.055  -0.074   0.472;
 0.074  -0.003   0.997  -0.758;
-0.055  -0.998   0.001   0.017;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 244221
WM  Intensity0    62.0302 +/-   8.9942
Ctx Intensity0    78.0510 +/-   8.8041
Pct Contrast0     23.0917 +/-  14.9004
Cost   0.1136
RelCost   0.1121

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1116   0.1116  0.0
     1  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000   0.0000      0.1092   0.1092  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1055   0.1055  0.0
     6  -0.1000  -0.1000  -0.1000  -0.1000   0.1000  -0.1000      0.1009   0.1009  0.0
    15  -0.1000  -0.1000  -0.1000   0.0000   0.1000  -0.1000      0.0995   0.0995  0.0
    33  -0.1000  -0.1000   0.0000  -0.1000   0.1000  -0.1000      0.0993   0.0993  0.0
    40  -0.1000  -0.1000   0.0000   0.0000   0.0000   0.0000      0.0988   0.0988  0.0
    42  -0.1000  -0.1000   0.0000   0.0000   0.1000  -0.1000      0.0987   0.0987  0.0
   114  -0.1000   0.0000   0.0000  -0.1000   0.1000  -0.1000      0.0979   0.0979  0.0
   120  -0.1000   0.0000   0.0000   0.0000   0.0000  -0.1000      0.0964   0.0964  0.0
   138  -0.1000   0.0000   0.1000  -0.1000   0.0000  -0.1000      0.0964   0.0964  0.0
   139  -0.1000   0.0000   0.1000  -0.1000   0.0000   0.0000      0.0963   0.0963  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.0938   0.0938  0.0

Final costs ----------------
Number of surface hits 244221
WM  Intensity0    62.0535 +/-   9.0422
Ctx Intensity0    78.0245 +/-   8.7600
Pct Contrast0     23.0325 +/-  14.8099
Cost   0.1081
RelCost   0.1121
Number of iterations     7
Min cost was 0.108101
RelMinCost   0.1067
Number of FunctionCalls   522
OptimizationTime 50.756000 sec
Parameters at optimum (transmm, rotdeg)
-0.14454  0.13806 -0.07267  0.05057  0.00263 -0.20736 
Number of surface hits 244221
WM  Intensity    62.0535 +/-   9.0422
Ctx Intensity    78.0245 +/-   8.7600
Pct Contrast     23.0325 +/-  14.8099
Cost at optimum   0.1081
RelCostOptimum   0.1067
nhits= 244221 wmmn=   62.0535 wmstd=  9.0422 constd=   14.8099 ctxmn=   78.0245 ctxstd=  8.7600 conmn =  23.0325 costmn =   0.1081 
#C#  -0.145   0.138  -0.073  0.051  0.003 -0.207 0.000000 0.000000 0.108101 62.053475 78.024528 23.032479 0.000000 0.500000     1 0
Reg at min cost was 
 0.996  -0.055  -0.071   0.324;
 0.071  -0.002   0.997  -0.622;
-0.055  -0.998   0.002  -0.056;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000   0.000  -0.004   0.147;
 0.004  -0.001  -0.000  -0.136;
-0.000  -0.000  -0.001   0.073;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.175645 0.372936