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- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake4
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat
- subject sub013
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376409012
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.996 -0.055 -0.074 0.472;
- 0.074 -0.003 0.997 -0.758;
- -0.055 -0.998 0.001 0.017;
- 0.000 0.000 0.000 1.000;
- Initial costs ----------------
- Number of surface hits 244221
- WM Intensity0 62.0302 +/- 8.9942
- Ctx Intensity0 78.0510 +/- 8.8041
- Pct Contrast0 23.0917 +/- 14.9004
- Cost 0.1136
- RelCost 0.1121
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1116 0.1116 0.0
- 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1092 0.1092 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1055 0.1055 0.0
- 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.1009 0.1009 0.0
- 15 -0.1000 -0.1000 -0.1000 0.0000 0.1000 -0.1000 0.0995 0.0995 0.0
- 33 -0.1000 -0.1000 0.0000 -0.1000 0.1000 -0.1000 0.0993 0.0993 0.0
- 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0988 0.0988 0.0
- 42 -0.1000 -0.1000 0.0000 0.0000 0.1000 -0.1000 0.0987 0.0987 0.0
- 114 -0.1000 0.0000 0.0000 -0.1000 0.1000 -0.1000 0.0979 0.0979 0.0
- 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.0964 0.0964 0.0
- 138 -0.1000 0.0000 0.1000 -0.1000 0.0000 -0.1000 0.0964 0.0964 0.0
- 139 -0.1000 0.0000 0.1000 -0.1000 0.0000 0.0000 0.0963 0.0963 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0938 0.0938 0.0
- Final costs ----------------
- Number of surface hits 244221
- WM Intensity0 62.0535 +/- 9.0422
- Ctx Intensity0 78.0245 +/- 8.7600
- Pct Contrast0 23.0325 +/- 14.8099
- Cost 0.1081
- RelCost 0.1121
- Number of iterations 7
- Min cost was 0.108101
- RelMinCost 0.1067
- Number of FunctionCalls 522
- OptimizationTime 50.756000 sec
- Parameters at optimum (transmm, rotdeg)
- -0.14454 0.13806 -0.07267 0.05057 0.00263 -0.20736
- Number of surface hits 244221
- WM Intensity 62.0535 +/- 9.0422
- Ctx Intensity 78.0245 +/- 8.7600
- Pct Contrast 23.0325 +/- 14.8099
- Cost at optimum 0.1081
- RelCostOptimum 0.1067
- nhits= 244221 wmmn= 62.0535 wmstd= 9.0422 constd= 14.8099 ctxmn= 78.0245 ctxstd= 8.7600 conmn = 23.0325 costmn = 0.1081
- #C# -0.145 0.138 -0.073 0.051 0.003 -0.207 0.000000 0.000000 0.108101 62.053475 78.024528 23.032479 0.000000 0.500000 1 0
- Reg at min cost was
- 0.996 -0.055 -0.071 0.324;
- 0.071 -0.002 0.997 -0.622;
- -0.055 -0.998 0.002 -0.056;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 0.000 -0.004 0.147;
- 0.004 -0.001 -0.000 -0.136;
- -0.000 -0.000 -0.001 0.073;
- 0.000 0.000 0.000 0.000;
- Surface RMS Diff (mm) 0.175645 0.372936
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