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aseg.stats

aseg.stats 9.4 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub011 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake6
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub011
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1329620.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1298971.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1300821.702549, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 277278.945723, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 280858.010963, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 558136.956686, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 269869.336529, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 269533.409334, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 539402.745863, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 70375.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 729170.956686, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1195183.702549, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1169136.702549, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1165932.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1907947.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.970070, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.392008, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 19, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 16, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 35, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1370643.403475, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2013/08/08 17:25:25 
    37. 

  37. # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/13 23:21:15 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2013/08/08 12:07:15 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2013/08/08 12:07:15 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4     13402    13402.2  Left-Lateral-Ventricle            17.3114    13.3349     0.0000    90.0000    90.0000 
    81. 

  81.   2   5       557      556.8  Left-Inf-Lat-Vent                 33.6182    16.7778     0.0000    86.0000    86.0000 
    82. 

  82.   3   7     16888    16887.7  Left-Cerebellum-White-Matter      83.6979     7.3118    28.0000   116.0000    88.0000 
    83. 

  83.   4   8     51200    51199.9  Left-Cerebellum-Cortex            55.6476     9.9291     7.0000    95.0000    88.0000 
    84. 

  84.   5  10      8908     8907.8  Left-Thalamus-Proper              84.3903     9.9510    49.0000   109.0000    60.0000 
    85. 

  85.   6  11      4195     4195.4  Left-Caudate                      67.1643     9.2933    15.0000   108.0000    93.0000 
    86. 

  86.   7  12      6838     6838.0  Left-Putamen                      73.5523     8.6805    37.0000   107.0000    70.0000 
    87. 

  87.   8  13      2472     2472.2  Left-Pallidum                     85.5123     7.5678    57.0000   107.0000    50.0000 
    88. 

  88.   9  14      1050     1050.0  3rd-Ventricle                     26.6030    15.3922     0.0000    68.0000    68.0000 
    89. 

  89.  10  15      2785     2784.9  4th-Ventricle                     17.8370    10.6595     0.0000    88.0000    88.0000 
    90. 

  90.  11  16     26255    26255.1  Brain-Stem                        82.5777    10.3040     0.0000   121.0000   121.0000 
    91. 

  91.  12  17      3823     3823.2  Left-Hippocampus                  61.3076     9.7225     9.0000    97.0000    88.0000 
    92. 

  92.  13  18      1957     1957.4  Left-Amygdala                     59.9189     8.4846    27.0000    86.0000    59.0000 
    93. 

  93.  14  24       995      995.3  CSF                               32.4738    14.5132     0.0000    82.0000    82.0000 
    94. 

  94.  15  26       985      985.0  Left-Accumbens-area               60.6328     7.8448    40.0000    92.0000    52.0000 
    95. 

  95.  16  28      4880     4880.3  Left-VentralDC                    87.3565    11.2919    26.0000   114.0000    88.0000 
    96. 

  96.  17  30        89       89.3  Left-vessel                       61.3587    19.1900    18.0000   104.0000    86.0000 
    97. 

  97.  18  31      1319     1319.0  Left-choroid-plexus               49.5000    16.9786    10.0000   100.0000    90.0000 
    98. 

  98.  19  43      8247     8246.8  Right-Lateral-Ventricle           17.2288    12.6846     0.0000    99.0000    99.0000 
    99. 

  99.  20  44       621      621.3  Right-Inf-Lat-Vent                26.6212    14.5198     1.0000    76.0000    75.0000 
    100. 

  100.  21  46     16640    16639.8  Right-Cerebellum-White-Matter     85.3923     7.5663    14.0000   115.0000   101.0000 
    101. 

  101.  22  47     50786    50786.0  Right-Cerebellum-Cortex           56.6074    10.6534     4.0000   100.0000    96.0000 
    102. 

  102.  23  49      8448     8447.7  Right-Thalamus-Proper             82.1622    10.7471    20.0000   111.0000    91.0000 
    103. 

  103.  24  50      4647     4646.6  Right-Caudate                     65.4195    10.0618    16.0000   106.0000    90.0000 
    104. 

  104.  25  51      6611     6611.2  Right-Putamen                     73.4994     7.9044    31.0000   101.0000    70.0000 
    105. 

  105.  26  52      2692     2692.2  Right-Pallidum                    87.0364     7.1536    56.0000   105.0000    49.0000 
    106. 

  106.  27  53      4395     4394.6  Right-Hippocampus                 59.2018    10.2948    15.0000   108.0000    93.0000 
    107. 

  107.  28  54      1787     1787.4  Right-Amygdala                    58.3520     8.3778    26.0000    84.0000    58.0000 
    108. 

  108.  29  58       842      842.3  Right-Accumbens-area              65.1212     8.5435    40.0000   108.0000    68.0000 
    109. 

  109.  30  60      4547     4546.7  Right-VentralDC                   87.4115    11.6077    20.0000   124.0000   104.0000 
    110. 

  110.  31  62        93       93.2  Right-vessel                      61.0571    12.1930    30.0000    85.0000    55.0000 
    111. 

  111.  32  63      1749     1749.2  Right-choroid-plexus              50.3392    16.6123     3.0000   112.0000   109.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77      1693     1693.4  WM-hypointensities                77.1168    14.9040     5.0000   113.0000   108.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80        23       22.7  non-WM-hypointensities            71.3704    12.0037    42.0000    93.0000    51.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       309      309.2  Optic-Chiasm                      81.7152    17.4060    26.0000   112.0000    86.0000 
    120. 

  120.  41 251      1230     1230.4  CC_Posterior                     104.7160     7.7567    26.0000   124.0000    98.0000 
    121. 

  121.  42 252       596      595.5  CC_Mid_Posterior                 103.2058     8.9082    38.0000   121.0000    83.0000 
    122. 

  122.  43 253       557      557.2  CC_Central                       101.6169     7.4843    48.0000   115.0000    67.0000 
    123. 

  123.  44 254       552      552.1  CC_Mid_Anterior                  102.1431     6.9792    58.0000   116.0000    58.0000 
    124. 

  124.  45 255      1264     1263.8  CC_Anterior                      105.1649    10.1994    28.0000   124.0000    96.0000 
    125.