# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub011 # sysname Linux # hostname snake6 # machine x86_64 # user fkaule # anatomy_type volume # # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer # subjectname sub011 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1329620.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1298971.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1300821.702549, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 277278.945723, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 280858.010963, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 558136.956686, mm^3 # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 269869.336529, mm^3 # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 269533.409334, mm^3 # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 539402.745863, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 70375.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 729170.956686, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1195183.702549, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1169136.702549, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1165932.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1907947.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.970070, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.392008, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 19, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 16, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 35, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1370643.403475, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2013/08/08 17:25:25 # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt # ColorTableTimeStamp 2013/05/13 23:21:15 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2013/08/08 12:07:15 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2013/08/08 12:07:15 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 13402 13402.2 Left-Lateral-Ventricle 17.3114 13.3349 0.0000 90.0000 90.0000 2 5 557 556.8 Left-Inf-Lat-Vent 33.6182 16.7778 0.0000 86.0000 86.0000 3 7 16888 16887.7 Left-Cerebellum-White-Matter 83.6979 7.3118 28.0000 116.0000 88.0000 4 8 51200 51199.9 Left-Cerebellum-Cortex 55.6476 9.9291 7.0000 95.0000 88.0000 5 10 8908 8907.8 Left-Thalamus-Proper 84.3903 9.9510 49.0000 109.0000 60.0000 6 11 4195 4195.4 Left-Caudate 67.1643 9.2933 15.0000 108.0000 93.0000 7 12 6838 6838.0 Left-Putamen 73.5523 8.6805 37.0000 107.0000 70.0000 8 13 2472 2472.2 Left-Pallidum 85.5123 7.5678 57.0000 107.0000 50.0000 9 14 1050 1050.0 3rd-Ventricle 26.6030 15.3922 0.0000 68.0000 68.0000 10 15 2785 2784.9 4th-Ventricle 17.8370 10.6595 0.0000 88.0000 88.0000 11 16 26255 26255.1 Brain-Stem 82.5777 10.3040 0.0000 121.0000 121.0000 12 17 3823 3823.2 Left-Hippocampus 61.3076 9.7225 9.0000 97.0000 88.0000 13 18 1957 1957.4 Left-Amygdala 59.9189 8.4846 27.0000 86.0000 59.0000 14 24 995 995.3 CSF 32.4738 14.5132 0.0000 82.0000 82.0000 15 26 985 985.0 Left-Accumbens-area 60.6328 7.8448 40.0000 92.0000 52.0000 16 28 4880 4880.3 Left-VentralDC 87.3565 11.2919 26.0000 114.0000 88.0000 17 30 89 89.3 Left-vessel 61.3587 19.1900 18.0000 104.0000 86.0000 18 31 1319 1319.0 Left-choroid-plexus 49.5000 16.9786 10.0000 100.0000 90.0000 19 43 8247 8246.8 Right-Lateral-Ventricle 17.2288 12.6846 0.0000 99.0000 99.0000 20 44 621 621.3 Right-Inf-Lat-Vent 26.6212 14.5198 1.0000 76.0000 75.0000 21 46 16640 16639.8 Right-Cerebellum-White-Matter 85.3923 7.5663 14.0000 115.0000 101.0000 22 47 50786 50786.0 Right-Cerebellum-Cortex 56.6074 10.6534 4.0000 100.0000 96.0000 23 49 8448 8447.7 Right-Thalamus-Proper 82.1622 10.7471 20.0000 111.0000 91.0000 24 50 4647 4646.6 Right-Caudate 65.4195 10.0618 16.0000 106.0000 90.0000 25 51 6611 6611.2 Right-Putamen 73.4994 7.9044 31.0000 101.0000 70.0000 26 52 2692 2692.2 Right-Pallidum 87.0364 7.1536 56.0000 105.0000 49.0000 27 53 4395 4394.6 Right-Hippocampus 59.2018 10.2948 15.0000 108.0000 93.0000 28 54 1787 1787.4 Right-Amygdala 58.3520 8.3778 26.0000 84.0000 58.0000 29 58 842 842.3 Right-Accumbens-area 65.1212 8.5435 40.0000 108.0000 68.0000 30 60 4547 4546.7 Right-VentralDC 87.4115 11.6077 20.0000 124.0000 104.0000 31 62 93 93.2 Right-vessel 61.0571 12.1930 30.0000 85.0000 55.0000 32 63 1749 1749.2 Right-choroid-plexus 50.3392 16.6123 3.0000 112.0000 109.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 1693 1693.4 WM-hypointensities 77.1168 14.9040 5.0000 113.0000 108.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 23 22.7 non-WM-hypointensities 71.3704 12.0037 42.0000 93.0000 51.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 309 309.2 Optic-Chiasm 81.7152 17.4060 26.0000 112.0000 86.0000 41 251 1230 1230.4 CC_Posterior 104.7160 7.7567 26.0000 124.0000 98.0000 42 252 596 595.5 CC_Mid_Posterior 103.2058 8.9082 38.0000 121.0000 83.0000 43 253 557 557.2 CC_Central 101.6169 7.4843 48.0000 115.0000 67.0000 44 254 552 552.1 CC_Mid_Anterior 102.1431 6.9792 58.0000 116.0000 58.0000 45 255 1264 1263.8 CC_Anterior 105.1649 10.1994 28.0000 124.0000 96.0000