cortical-surfaces-freesurfer/sub-07/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake4
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat
subject sub007
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376598094
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.046   0.038  -0.175;
-0.034  -0.091   0.995   0.633;
 0.049  -0.995  -0.089  -0.634;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 304307
WM  Intensity0    55.4986 +/-   9.4676
Ctx Intensity0    67.2995 +/-   9.4924
Pct Contrast0     19.4061 +/-  14.3630
Cost   0.1462
RelCost   0.1439

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1466   0.1466  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1430   0.1430  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1421   0.1421  0.0
    18  -0.1000  -0.1000  -0.1000   0.1000  -0.1000  -0.1000      0.1413   0.1413  0.0
    21  -0.1000  -0.1000  -0.1000   0.1000   0.0000  -0.1000      0.1381   0.1381  0.0
   102  -0.1000   0.0000  -0.1000   0.1000   0.0000  -0.1000      0.1364   0.1364  0.0
   120  -0.1000   0.0000   0.0000   0.0000   0.0000  -0.1000      0.1358   0.1358  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1346   0.1346  0.0

Final costs ----------------
Number of surface hits 304307
WM  Intensity0    55.5048 +/-   9.5055
Ctx Intensity0    67.3034 +/-   9.4884
Pct Contrast0     19.4056 +/-  14.3131
Cost   0.1418
RelCost   0.1439
Number of iterations     6
Min cost was 0.141809
RelMinCost   0.1395
Number of FunctionCalls   472
OptimizationTime 57.287000 sec
Parameters at optimum (transmm, rotdeg)
 0.20508  0.07676  0.06874  0.03240 -0.14135  0.10713 
Number of surface hits 304307
WM  Intensity    55.5048 +/-   9.5055
Ctx Intensity    67.3034 +/-   9.4884
Pct Contrast     19.4056 +/-  14.3131
Cost at optimum   0.1418
RelCostOptimum   0.1395
nhits= 304307 wmmn=   55.5048 wmstd=  9.5055 constd=   14.3131 ctxmn=   67.3034 ctxstd=  9.4884 conmn =  19.4056 costmn =   0.1418 
#C#   0.205   0.077   0.069  0.032 -0.141  0.107 0.000000 0.000000 0.141809 55.504834 67.303418 19.405588 0.000000 0.500000     1 0
Reg at min cost was 
 0.998   0.048   0.037   0.030;
-0.032  -0.090   0.995   0.710;
 0.051  -0.995  -0.089  -0.565;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
 0.000  -0.003   0.002  -0.205;
-0.002  -0.001  -0.000  -0.077;
-0.002  -0.000  -0.001  -0.069;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.190373 0.408394