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- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake4
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat
- subject sub007
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376598094
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.046 0.038 -0.175;
- -0.034 -0.091 0.995 0.633;
- 0.049 -0.995 -0.089 -0.634;
- 0.000 0.000 0.000 1.000;
- Initial costs ----------------
- Number of surface hits 304307
- WM Intensity0 55.4986 +/- 9.4676
- Ctx Intensity0 67.2995 +/- 9.4924
- Pct Contrast0 19.4061 +/- 14.3630
- Cost 0.1462
- RelCost 0.1439
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1466 0.1466 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1430 0.1430 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1421 0.1421 0.0
- 18 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1413 0.1413 0.0
- 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1381 0.1381 0.0
- 102 -0.1000 0.0000 -0.1000 0.1000 0.0000 -0.1000 0.1364 0.1364 0.0
- 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1358 0.1358 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1346 0.1346 0.0
- Final costs ----------------
- Number of surface hits 304307
- WM Intensity0 55.5048 +/- 9.5055
- Ctx Intensity0 67.3034 +/- 9.4884
- Pct Contrast0 19.4056 +/- 14.3131
- Cost 0.1418
- RelCost 0.1439
- Number of iterations 6
- Min cost was 0.141809
- RelMinCost 0.1395
- Number of FunctionCalls 472
- OptimizationTime 57.287000 sec
- Parameters at optimum (transmm, rotdeg)
- 0.20508 0.07676 0.06874 0.03240 -0.14135 0.10713
- Number of surface hits 304307
- WM Intensity 55.5048 +/- 9.5055
- Ctx Intensity 67.3034 +/- 9.4884
- Pct Contrast 19.4056 +/- 14.3131
- Cost at optimum 0.1418
- RelCostOptimum 0.1395
- nhits= 304307 wmmn= 55.5048 wmstd= 9.5055 constd= 14.3131 ctxmn= 67.3034 ctxstd= 9.4884 conmn = 19.4056 costmn = 0.1418
- #C# 0.205 0.077 0.069 0.032 -0.141 0.107 0.000000 0.000000 0.141809 55.504834 67.303418 19.405588 0.000000 0.500000 1 0
- Reg at min cost was
- 0.998 0.048 0.037 0.030;
- -0.032 -0.090 0.995 0.710;
- 0.051 -0.995 -0.089 -0.565;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 -0.003 0.002 -0.205;
- -0.002 -0.001 -0.000 -0.077;
- -0.002 -0.000 -0.001 -0.069;
- 0.000 0.000 0.000 0.000;
- Surface RMS Diff (mm) 0.190373 0.408394
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