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- Logfile for bbregister
- Thu Aug 8 23:42:01 CEST 2013
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- /opt/freesurfer/5.3.0/bin/bbregister --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.lta --init-fsl --T2
- $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
- Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- FREESURFER_HOME /opt/freesurfer/5.3.0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.998766, -0.0418513, -0.0267421)
- j_ras = (-0.0444513, 0.99343, 0.105455)
- k_ras = (-0.022153, -0.106514, 0.994064)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii...
- fslregister --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister --dof 6 --fsvol brainmask.mgz
- Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fslregister.log
- Thu Aug 8 23:42:05 CEST 2013
- --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister --dof 6 --fsvol brainmask.mgz
- $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
- snake4
- Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- nIters 1
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/brainmask.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 4.65661e-09, 3.72529e-09)
- j_ras = (5.58794e-09, -1.49012e-08, -1)
- k_ras = (-8.61473e-09, 1, 1.49012e-08)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii...
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii --frame 0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii --frame 0
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.998766, -0.0418513, -0.0267421)
- j_ras = (-0.0444513, 0.99343, 0.105455)
- k_ras = (-0.022153, -0.106514, 0.994064)
- keeping frame 0
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii...
- Mov determinant is -0.311076
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/reg0.4731.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat0 --s sub007 --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/reg0.4731.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.889;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 1, float2int = 0
- Computing reg from header (and possibly input matrix)
- ---- Input registration matrix (computed) --------
- 0.999 0.042 0.027 0.000;
- -0.022 -0.107 0.994 0.000;
- 0.044 -0.993 -0.105 -0.000;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.999 0.042 0.027 0.000;
- -0.022 -0.107 0.994 0.000;
- 0.044 -0.993 -0.105 -0.000;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub007
- RegMat ---------------------------
- 0.999 0.042 0.027 0.000;
- -0.022 -0.107 0.994 0.000;
- 0.044 -0.993 -0.105 -0.000;
- 0.000 0.000 0.000 1.000;
- FSLOUTPUTTYPE NIFTI
- tkreg2FSL: mov det = -0.311076, ref det = -1
- Thu Aug 8 23:42:12 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat0
- Thu Aug 8 23:46:31 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
- tkregister2_cmdl --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- ---- FSL registration matrix --------
- 0.998 0.049 0.030 22.056;
- 0.035 -0.095 -0.995 264.844;
- -0.046 0.994 -0.097 16.715;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.889;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- FSLOUTPUTTYPE NIFTI
- fsl2TkReg: mov det = -0.311076, ref det = -1
- ---- Input registration matrix (computed) --------
- 0.998 0.046 0.035 0.046;
- -0.030 -0.097 0.995 0.583;
- 0.049 -0.994 -0.095 -0.900;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.998 0.046 0.035 0.046;
- -0.030 -0.097 0.995 0.583;
- 0.049 -0.994 -0.095 -0.900;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub007
- RegMat ---------------------------
- 0.998 0.046 0.035 0.046;
- -0.030 -0.097 0.995 0.583;
- 0.049 -0.994 -0.095 -0.900;
- 0.000 0.000 0.000 1.000;
-
- Started at Thu Aug 8 23:42:05 CEST 2013
- Ended at Thu Aug 8 23:52:25 CEST 2013
-
- fslregister Done
-
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --surf orig
-
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- sysname Linux
- hostname snake4
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat
- subject sub007
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 100
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000100
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376518834
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.046 0.035 0.046;
- -0.030 -0.097 0.995 0.583;
- 0.049 -0.994 -0.095 -0.900;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.991249
- 1 -25.0 -25.0 25.0 0.991829
- 2 -25.0 25.0 -25.0 0.986389
- 3 -25.0 25.0 25.0 1.010019
- 4 25.0 -25.0 -25.0 1.016478
- 5 25.0 -25.0 25.0 1.018360
- 6 25.0 25.0 -25.0 1.026574
- 7 25.0 25.0 25.0 1.014561
- REL: 8 0.193677 8.055460 1.006932 rel = 0.192343
- Initial costs ----------------
- Number of surface hits 3043
- WM Intensity 55.5078 +/- 9.6160
- Ctx Intensity 67.6400 +/- 9.7926
- Pct Contrast 19.8581 +/- 15.4931
- Cost 0.1937
- RelCost 0.1923
- ------------------------------------
- Brute force preopt -4 4 4, n = 729
- 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9721 0.9721 0.0
- 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8971 0.8971 0.0
- 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8774 0.8774 0.0
- 102 -4.0000 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.8240 0.8240 0.0
- 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7098 0.7098 0.0
- 346 0.0000 0.0000 -4.0000 4.0000 0.0000 0.0000 0.6742 0.6742 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1937 0.1937 0.0
- Brute Force --------------------------
- Min cost was 0.193677
- Number of iterations 729
- Search time 2.256000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 7 -0.019 0.000 0.000 0.000 0.000 0.000 0.1934061585
- 8 -0.104 0.000 0.000 0.000 0.000 0.000 0.1929380224
- 12 -0.114 0.000 0.000 0.000 0.000 0.000 0.1929257262
- 14 -0.111 0.000 0.000 0.000 0.000 0.000 0.1929253878
- 16 -0.112 0.000 0.000 0.000 0.000 0.000 0.1929247277
- 17 -0.113 0.000 0.000 0.000 0.000 0.000 0.1929246708
- 24 -0.113 -0.093 0.000 0.000 0.000 0.000 0.1927190348
- 25 -0.113 -0.055 0.000 0.000 0.000 0.000 0.1923274726
- 26 -0.113 -0.051 0.000 0.000 0.000 0.000 0.1922827635
- 27 -0.113 -0.032 0.000 0.000 0.000 0.000 0.1921745445
- 30 -0.113 -0.033 0.000 0.000 0.000 0.000 0.1921719557
- 33 -0.113 -0.033 1.000 0.000 0.000 0.000 0.1739615505
- 37 -0.113 -0.033 0.618 0.000 0.000 0.000 0.1546181828
- 38 -0.113 -0.033 0.570 0.000 0.000 0.000 0.1536184433
- 40 -0.113 -0.033 0.553 0.000 0.000 0.000 0.1534524363
- 41 -0.113 -0.033 0.534 0.000 0.000 0.000 0.1534009548
- 42 -0.113 -0.033 0.536 0.000 0.000 0.000 0.1533939252
- 44 -0.113 -0.033 0.538 0.000 0.000 0.000 0.1533923823
- 52 -0.113 -0.033 0.538 0.174 0.000 0.000 0.1468022854
- 53 -0.113 -0.033 0.538 0.176 0.000 0.000 0.1467637315
- 55 -0.113 -0.033 0.538 0.198 0.000 0.000 0.1465500295
- 56 -0.113 -0.033 0.538 0.199 0.000 0.000 0.1465495950
- 57 -0.113 -0.033 0.538 0.200 0.000 0.000 0.1465482938
- 60 -0.113 -0.033 0.538 0.203 0.000 0.000 0.1465402647
- 70 -0.113 -0.033 0.538 0.203 0.024 0.000 0.1462816922
- 80 -0.113 -0.033 0.538 0.203 0.024 -0.119 0.1454949850
- 81 -0.113 -0.033 0.538 0.203 0.024 -0.097 0.1454077122
- 82 -0.113 -0.033 0.538 0.203 0.024 -0.090 0.1453918823
- 94 -0.107 -0.033 0.538 0.203 0.024 -0.090 0.1453520159
- 95 -0.081 -0.033 0.538 0.203 0.024 -0.090 0.1452226094
- 97 -0.058 -0.033 0.538 0.203 0.024 -0.090 0.1450797534
- 98 -0.016 -0.033 0.538 0.203 0.024 -0.090 0.1448732974
- 104 -0.017 -0.033 0.538 0.203 0.024 -0.090 0.1448730636
- 112 -0.017 0.099 0.538 0.203 0.024 -0.090 0.1421495608
- 114 -0.017 0.066 0.538 0.203 0.024 -0.090 0.1420170294
- 116 -0.017 0.078 0.538 0.203 0.024 -0.090 0.1419504451
- 118 -0.017 0.077 0.538 0.203 0.024 -0.090 0.1419496850
- 120 -0.017 0.076 0.538 0.203 0.024 -0.090 0.1419482133
- 128 -0.017 0.076 0.429 0.203 0.024 -0.090 0.1408250796
- 129 -0.017 0.076 0.444 0.203 0.024 -0.090 0.1406757515
- 130 -0.017 0.076 0.459 0.203 0.024 -0.090 0.1406291206
- 133 -0.017 0.076 0.462 0.203 0.024 -0.090 0.1406277824
- 134 -0.017 0.076 0.461 0.203 0.024 -0.090 0.1406275492
- 141 -0.017 0.076 0.461 0.244 0.024 -0.090 0.1402854869
- 142 -0.017 0.076 0.461 0.243 0.024 -0.090 0.1402772088
- 143 -0.017 0.076 0.461 0.233 0.024 -0.090 0.1401954529
- 145 -0.017 0.076 0.461 0.229 0.024 -0.090 0.1401783905
- 146 -0.017 0.076 0.461 0.228 0.024 -0.090 0.1401776098
- 155 -0.017 0.076 0.461 0.228 -0.008 -0.090 0.1400072837
- 156 -0.017 0.076 0.461 0.228 -0.007 -0.090 0.1400067285
- 157 -0.017 0.076 0.461 0.228 -0.006 -0.090 0.1400058131
- 159 -0.017 0.076 0.461 0.228 -0.001 -0.090 0.1400034554
- 161 -0.017 0.076 0.461 0.228 -0.003 -0.090 0.1400032237
- 169 -0.017 0.076 0.461 0.228 -0.003 -0.040 0.1395222284
- 170 -0.017 0.076 0.461 0.228 -0.003 -0.025 0.1394631486
- 182 -0.042 0.076 0.461 0.228 -0.003 -0.025 0.1392295453
- 183 -0.045 0.076 0.461 0.228 -0.003 -0.025 0.1392125962
- 185 -0.051 0.076 0.461 0.228 -0.003 -0.025 0.1391954150
- 186 -0.052 0.076 0.461 0.228 -0.003 -0.025 0.1391952674
- 207 -0.052 0.076 0.437 0.228 -0.003 -0.025 0.1389939393
- 208 -0.052 0.076 0.436 0.228 -0.003 -0.025 0.1389916174
- 210 -0.052 0.076 0.434 0.228 -0.003 -0.025 0.1389900252
- 219 -0.052 0.076 0.434 0.237 -0.003 -0.025 0.1389426087
- 220 -0.052 0.076 0.434 0.240 -0.003 -0.025 0.1389309996
- 222 -0.052 0.076 0.434 0.244 -0.003 -0.025 0.1389262283
- 223 -0.052 0.076 0.434 0.243 -0.003 -0.025 0.1389260747
- 235 -0.052 0.076 0.434 0.243 -0.007 -0.025 0.1389214808
- 238 -0.052 0.076 0.434 0.243 -0.008 -0.025 0.1389211114
- 245 -0.052 0.076 0.434 0.243 -0.008 -0.075 0.1387751442
- 246 -0.052 0.076 0.434 0.243 -0.008 -0.063 0.1386801727
- 247 -0.052 0.076 0.434 0.243 -0.008 -0.055 0.1386741770
- 248 -0.052 0.076 0.434 0.243 -0.008 -0.058 0.1386707715
- 251 -0.088 0.076 0.406 0.259 -0.013 -0.091 0.1383439096
- 254 -0.145 0.076 0.362 0.284 -0.021 -0.145 0.1378308224
- 259 -0.222 0.076 0.303 0.318 -0.032 -0.216 0.1376057260
- 260 -0.201 0.076 0.319 0.308 -0.029 -0.197 0.1375520973
- 277 -0.201 0.076 0.319 0.308 -0.029 -0.219 0.1374804300
- 279 -0.201 0.076 0.319 0.308 -0.029 -0.234 0.1374613638
- 280 -0.201 0.076 0.319 0.308 -0.029 -0.229 0.1374552182
- 281 -0.201 0.076 0.319 0.308 -0.029 -0.230 0.1374542155
- 291 -0.201 0.019 0.319 0.308 -0.029 -0.230 0.1362655158
- 293 -0.201 0.026 0.319 0.308 -0.029 -0.230 0.1362157040
- 295 -0.201 0.027 0.319 0.308 -0.029 -0.230 0.1362146064
- 302 -0.201 0.027 0.288 0.308 -0.029 -0.230 0.1360537655
- 304 -0.201 0.027 0.294 0.308 -0.029 -0.230 0.1360521244
- 306 -0.201 0.027 0.292 0.308 -0.029 -0.230 0.1360508154
- 315 -0.201 0.027 0.292 0.327 -0.029 -0.230 0.1359026204
- 317 -0.201 0.027 0.292 0.326 -0.029 -0.230 0.1359003914
- 328 -0.201 0.027 0.292 0.326 0.003 -0.230 0.1351833728
- 330 -0.201 0.027 0.292 0.326 0.002 -0.230 0.1351805432
- 332 -0.201 0.027 0.292 0.326 0.001 -0.230 0.1351789449
- 335 -0.236 0.027 0.264 0.342 -0.004 -0.263 0.1351470756
- 339 -0.223 0.027 0.275 0.336 -0.002 -0.250 0.1351446910
- 344 -0.224 0.027 0.274 0.337 -0.002 -0.251 0.1351438076
- 358 -0.224 0.027 0.274 0.337 -0.002 -0.245 0.1350866132
- 359 -0.224 0.027 0.274 0.337 -0.002 -0.234 0.1350508134
- 360 -0.224 0.027 0.274 0.337 -0.002 -0.235 0.1350502326
- 370 -0.224 0.038 0.274 0.337 -0.002 -0.235 0.1350105739
- 381 -0.224 0.038 0.267 0.337 -0.002 -0.235 0.1350010105
- 383 -0.224 0.038 0.268 0.337 -0.002 -0.235 0.1349998244
- 384 -0.224 0.038 0.269 0.337 -0.002 -0.235 0.1349988486
- 396 -0.224 0.038 0.269 0.338 -0.002 -0.235 0.1349985664
- 405 -0.224 0.038 0.269 0.338 0.016 -0.235 0.1348326439
- 406 -0.224 0.038 0.269 0.338 0.015 -0.235 0.1348291783
- 407 -0.224 0.038 0.269 0.338 0.013 -0.235 0.1348270992
- 418 -0.222 0.038 0.271 0.337 0.013 -0.233 0.1348259642
- 423 -0.222 0.038 0.271 0.337 0.013 -0.233 0.1348259627
- 425 -0.222 0.038 0.271 0.337 0.013 -0.233 0.1348257670
- 427 -0.220 0.049 0.268 0.337 0.029 -0.215 0.1347504837
- 433 -0.221 0.045 0.269 0.337 0.023 -0.222 0.1347441598
- 434 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347358587
- 435 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347357220
- 438 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347354803
- 442 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347354483
- 451 -0.221 0.047 0.269 0.337 0.026 -0.211 0.1347039705
- 452 -0.221 0.047 0.269 0.337 0.026 -0.209 0.1347034921
- 471 -0.221 0.047 0.254 0.337 0.026 -0.209 0.1346931341
- 472 -0.221 0.047 0.260 0.337 0.026 -0.209 0.1346611662
- 473 -0.221 0.047 0.261 0.337 0.026 -0.209 0.1346598212
- 483 -0.221 0.047 0.261 0.335 0.026 -0.209 0.1346555090
- 484 -0.221 0.047 0.261 0.334 0.026 -0.209 0.1346516761
- 487 -0.221 0.047 0.261 0.333 0.026 -0.209 0.1346507496
- 495 -0.220 0.047 0.262 0.333 0.026 -0.209 0.1346496957
- 497 -0.219 0.047 0.262 0.332 0.026 -0.208 0.1346489549
- 501 -0.219 0.047 0.262 0.332 0.026 -0.208 0.1346486518
- 509 -0.220 0.044 0.263 0.332 0.022 -0.213 0.1346368280
- 511 -0.220 0.044 0.263 0.332 0.022 -0.213 0.1346366468
- 529 -0.220 0.044 0.263 0.332 0.022 -0.212 0.1346322885
- 530 -0.220 0.044 0.263 0.332 0.022 -0.209 0.1346271251
- 532 -0.220 0.044 0.263 0.332 0.022 -0.207 0.1346270570
- 534 -0.220 0.044 0.263 0.332 0.022 -0.208 0.1346263451
- 546 -0.220 0.045 0.263 0.332 0.022 -0.208 0.1346254968
- 573 -0.221 0.045 0.262 0.333 0.022 -0.209 0.1346235626
- 574 -0.222 0.045 0.261 0.333 0.022 -0.210 0.1346228639
- 575 -0.222 0.045 0.261 0.333 0.022 -0.210 0.1346227487
- 579 -0.222 0.045 0.261 0.333 0.022 -0.210 0.1346226163
- 591 -0.222 0.044 0.261 0.333 0.021 -0.211 0.1346225497
- 592 -0.222 0.044 0.261 0.333 0.021 -0.210 0.1346223234
- 593 -0.222 0.045 0.261 0.333 0.021 -0.210 0.1346220382
- 607 -0.222 0.045 0.261 0.333 0.021 -0.209 0.1346214237
- 628 -0.222 0.045 0.264 0.333 0.021 -0.209 0.1346204271
- 630 -0.222 0.045 0.263 0.333 0.021 -0.209 0.1346197724
- 640 -0.222 0.045 0.263 0.332 0.021 -0.209 0.1346193403
- 650 -0.224 0.045 0.262 0.332 0.021 -0.211 0.1346189424
- 652 -0.223 0.045 0.262 0.332 0.021 -0.210 0.1346188666
- 654 -0.223 0.045 0.263 0.332 0.021 -0.210 0.1346187808
- 656 -0.223 0.045 0.263 0.332 0.021 -0.210 0.1346186327
- 658 -0.223 0.045 0.263 0.332 0.021 -0.210 0.1346185472
- 669 -0.223 0.044 0.263 0.332 0.021 -0.210 0.1346184823
- 671 -0.223 0.044 0.263 0.332 0.021 -0.210 0.1346184437
- Powell done niters = 7
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.978193
- 1 -25.0 -25.0 25.0 1.003211
- 2 -25.0 25.0 -25.0 0.997539
- 3 -25.0 25.0 25.0 1.003521
- 4 25.0 -25.0 -25.0 1.013809
- 5 25.0 -25.0 25.0 1.028591
- 6 25.0 25.0 -25.0 0.995395
- 7 25.0 25.0 25.0 1.008285
- REL: 8 0.134618 8.028544 1.003568 rel = 0.13414
- Number of iterations 7
- Min cost was 0.134618
- Number of FunctionCalls 675
- TolPowell 0.000100
- nMaxItersPowell 36
- OptimizationTime 1.992000 sec
- Parameters at optimum (transmm) -0.22291 0.04437 0.26269
- Parameters at optimum (rotdeg) 0.33207 0.02092 -0.21016
- Final costs ----------------
- Number of surface hits 3043
- WM Intensity 55.4287 +/- 9.2173
- Ctx Intensity 67.2313 +/- 9.3579
- Pct Contrast 19.4196 +/- 13.8146
- Cost 0.1346
- RelCost 0.1923
- Reg at min cost was
- 0.998 0.046 0.038 -0.175;
- -0.034 -0.091 0.995 0.633;
- 0.049 -0.995 -0.089 -0.634;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat, type = 14
- Original Reg
- 0.998 0.046 0.035 0.046;
- -0.030 -0.097 0.995 0.583;
- 0.049 -0.994 -0.095 -0.900;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 0.001 -0.004 0.221;
- 0.004 -0.006 -0.000 -0.049;
- 0.001 0.001 -0.006 -0.266;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 0.592709
- Computing change in rh position
- Surface RMS Diff (mm) 0.591639 0.872507
- mri_segreg done
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake4
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat
- subject sub007
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376598094
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.046 0.038 -0.175;
- -0.034 -0.091 0.995 0.633;
- 0.049 -0.995 -0.089 -0.634;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.003720
- 1 -25.0 -25.0 25.0 1.014011
- 2 -25.0 25.0 -25.0 1.011400
- 3 -25.0 25.0 25.0 1.010058
- 4 25.0 -25.0 -25.0 1.022451
- 5 25.0 -25.0 25.0 1.032368
- 6 25.0 25.0 -25.0 1.016719
- 7 25.0 25.0 25.0 1.016638
- REL: 8 0.146195 8.127364 1.015920 rel = 0.143904
- Initial costs ----------------
- Number of surface hits 304307
- WM Intensity 55.4986 +/- 9.4676
- Ctx Intensity 67.2995 +/- 9.4924
- Pct Contrast 19.4061 +/- 14.3630
- Cost 0.1462
- RelCost 0.1439
- ------------------------------------
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1466 0.1466 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1430 0.1430 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1421 0.1421 0.0
- 18 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1413 0.1413 0.0
- 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1381 0.1381 0.0
- 102 -0.1000 0.0000 -0.1000 0.1000 0.0000 -0.1000 0.1364 0.1364 0.0
- 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1358 0.1358 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1346 0.1346 0.0
- Brute Force --------------------------
- Min cost was 0.134618
- Number of iterations 729
- Search time 2.143000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 7 0.113 0.000 0.000 0.000 0.000 0.000 0.1450895347
- 8 0.110 0.000 0.000 0.000 0.000 0.000 0.1450858312
- 9 0.104 0.000 0.000 0.000 0.000 0.000 0.1450844897
- 11 0.106 0.000 0.000 0.000 0.000 0.000 0.1450841591
- 20 0.106 0.071 0.000 0.000 0.000 0.000 0.1446850063
- 21 0.106 0.061 0.000 0.000 0.000 0.000 0.1446593522
- 22 0.106 0.057 0.000 0.000 0.000 0.000 0.1446579395
- 31 0.106 0.057 0.106 0.000 0.000 0.000 0.1439143376
- 32 0.106 0.057 0.091 0.000 0.000 0.000 0.1438930402
- 34 0.106 0.057 0.093 0.000 0.000 0.000 0.1438928807
- 43 0.106 0.057 0.093 0.036 0.000 0.000 0.1438125946
- 44 0.106 0.057 0.093 0.024 0.000 0.000 0.1437849073
- 53 0.106 0.057 0.093 0.024 -0.084 0.000 0.1427550857
- 54 0.106 0.057 0.093 0.024 -0.103 0.000 0.1426795413
- 55 0.106 0.057 0.093 0.024 -0.117 0.000 0.1426586904
- 56 0.106 0.057 0.093 0.024 -0.121 0.000 0.1426579855
- 57 0.106 0.057 0.093 0.024 -0.120 0.000 0.1426577427
- 65 0.106 0.057 0.093 0.024 -0.120 0.055 0.1422166418
- 67 0.106 0.057 0.093 0.024 -0.120 0.057 0.1422163921
- 76 0.169 0.057 0.093 0.024 -0.120 0.057 0.1420836601
- 77 0.151 0.057 0.093 0.024 -0.120 0.057 0.1420548893
- 78 0.150 0.057 0.093 0.024 -0.120 0.057 0.1420547346
- 87 0.150 0.071 0.093 0.024 -0.120 0.057 0.1420279277
- 89 0.150 0.069 0.093 0.024 -0.120 0.057 0.1420276970
- 98 0.150 0.069 0.089 0.024 -0.120 0.057 0.1420185163
- 99 0.150 0.069 0.079 0.024 -0.120 0.057 0.1420076535
- 100 0.150 0.069 0.078 0.024 -0.120 0.057 0.1420072887
- 101 0.150 0.069 0.075 0.024 -0.120 0.057 0.1420072635
- 104 0.150 0.069 0.076 0.024 -0.120 0.057 0.1420072037
- 112 0.150 0.069 0.076 0.028 -0.120 0.057 0.1420046225
- 122 0.150 0.069 0.076 0.028 -0.126 0.057 0.1419991231
- 123 0.150 0.069 0.076 0.028 -0.130 0.057 0.1419963952
- 126 0.150 0.069 0.076 0.028 -0.133 0.057 0.1419958969
- 135 0.150 0.069 0.076 0.028 -0.133 0.079 0.1419321091
- 138 0.193 0.082 0.060 0.031 -0.145 0.102 0.1418299848
- 146 0.196 0.083 0.059 0.032 -0.146 0.103 0.1418299444
- 148 0.194 0.083 0.060 0.031 -0.146 0.103 0.1418298225
- 150 0.195 0.083 0.060 0.032 -0.146 0.103 0.1418298160
- 151 0.195 0.083 0.059 0.032 -0.146 0.103 0.1418297682
- 163 0.195 0.083 0.059 0.032 -0.146 0.102 0.1418293486
- 172 0.195 0.073 0.059 0.032 -0.146 0.102 0.1418252952
- 173 0.195 0.077 0.059 0.032 -0.146 0.102 0.1418238530
- 183 0.195 0.077 0.070 0.032 -0.146 0.102 0.1418164144
- 203 0.195 0.077 0.070 0.032 -0.140 0.102 0.1418147057
- 204 0.195 0.077 0.070 0.032 -0.141 0.102 0.1418146831
- 205 0.195 0.077 0.070 0.032 -0.142 0.102 0.1418146691
- 213 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418121060
- 214 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418121038
- 215 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418120734
- 216 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418120708
- 225 0.201 0.078 0.068 0.032 -0.144 0.104 0.1418120083
- 235 0.201 0.077 0.068 0.032 -0.144 0.104 0.1418116040
- 244 0.201 0.077 0.070 0.032 -0.144 0.104 0.1418115243
- 246 0.201 0.077 0.069 0.032 -0.144 0.104 0.1418114284
- 264 0.201 0.077 0.069 0.032 -0.141 0.104 0.1418105057
- 273 0.203 0.077 0.069 0.032 -0.142 0.105 0.1418098875
- 274 0.204 0.077 0.068 0.032 -0.142 0.106 0.1418094200
- 277 0.205 0.078 0.068 0.032 -0.142 0.106 0.1418093614
- 278 0.205 0.078 0.068 0.032 -0.142 0.106 0.1418093170
- 300 0.205 0.077 0.068 0.032 -0.142 0.106 0.1418092649
- 311 0.205 0.077 0.069 0.032 -0.142 0.106 0.1418092468
- 330 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418091360
- 339 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418090722
- 343 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418090189
- 405 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418089950
- 409 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418089946
- Powell done niters = 6
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.004926
- 1 -25.0 -25.0 25.0 1.013640
- 2 -25.0 25.0 -25.0 1.012322
- 3 -25.0 25.0 25.0 1.009514
- 4 25.0 -25.0 -25.0 1.021360
- 5 25.0 -25.0 25.0 1.032719
- 6 25.0 25.0 -25.0 1.018272
- 7 25.0 25.0 25.0 1.018092
- REL: 8 0.141809 8.130844 1.016356 rel = 0.139527
- Number of iterations 6
- Min cost was 0.141809
- Number of FunctionCalls 472
- TolPowell 0.000000
- nMaxItersPowell 36
- OptimizationTime 57.287000 sec
- Parameters at optimum (transmm) 0.20508 0.07676 0.06874
- Parameters at optimum (rotdeg) 0.03240 -0.14135 0.10713
- Final costs ----------------
- Number of surface hits 304307
- WM Intensity 55.5048 +/- 9.5055
- Ctx Intensity 67.3034 +/- 9.4884
- Pct Contrast 19.4056 +/- 14.3131
- Cost 0.1418
- RelCost 0.1439
- Reg at min cost was
- 0.998 0.048 0.037 0.030;
- -0.032 -0.090 0.995 0.710;
- 0.051 -0.995 -0.089 -0.565;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat, type = 14
- Original Reg
- 0.998 0.046 0.038 -0.175;
- -0.034 -0.091 0.995 0.633;
- 0.049 -0.995 -0.089 -0.634;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 -0.003 0.002 -0.205;
- -0.002 -0.001 -0.000 -0.077;
- -0.002 -0.000 -0.001 -0.069;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 0.133062
- Computing change in rh position
- Surface RMS Diff (mm) 0.190373 0.408394
- mri_segreg done
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.lta
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- ---- Input registration matrix --------
- 0.998 0.048 0.037 0.030;
- -0.032 -0.090 0.995 0.710;
- 0.051 -0.995 -0.089 -0.565;
- 0.000 0.000 0.000 1.000;
- float2int = 0
- ---------------------------------------
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz
- Tmov: --------------------
- -0.700 0.000 0.000 95.889;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- ---- Input registration matrix --------
- 0.998 0.048 0.037 0.030;
- -0.032 -0.090 0.995 0.710;
- 0.051 -0.995 -0.089 -0.565;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub007
- RegMat ---------------------------
- 0.998 0.048 0.037 0.030;
- -0.032 -0.090 0.995 0.710;
- 0.051 -0.995 -0.089 -0.565;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 1.000 -0.006 -0.011 -0.131;
- 0.006 1.000 0.016 -0.013;
- 0.011 -0.016 1.000 -0.292;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 0.699 0.034 0.022 21.553;
- 0.026 -0.059 -0.664 263.990;
- -0.034 0.663 -0.060 16.377;
- 0.000 0.000 0.000 1.000;
- Cleaning up
-
- Started at Thu Aug 8 23:42:01 CEST 2013
- Ended at Thu Aug 8 23:54:16 CEST 2013
- BBR-Run-Time-Sec 735
-
- bbregister Done
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --surf
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