Logfile for bbregister Thu Aug 8 23:42:01 CEST 2013 setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts /opt/freesurfer/5.3.0/bin/bbregister --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.lta --init-fsl --T2 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer/5.3.0 mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998766, -0.0418513, -0.0267421) j_ras = (-0.0444513, 0.99343, 0.105455) k_ras = (-0.022153, -0.106514, 0.994064) writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii... fslregister --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister --dof 6 --fsvol brainmask.mgz Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fslregister.log Thu Aug 8 23:42:05 CEST 2013 --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister --dof 6 --fsvol brainmask.mgz $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ snake4 Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 4.65661e-09, 3.72529e-09) j_ras = (5.58794e-09, -1.49012e-08, -1) k_ras = (-8.61473e-09, 1, 1.49012e-08) writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii... -------------------------------------- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii --frame 0 mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998766, -0.0418513, -0.0267421) j_ras = (-0.0444513, 0.99343, 0.105455) k_ras = (-0.022153, -0.106514, 0.994064) keeping frame 0 writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii... Mov determinant is -0.311076 /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/reg0.4731.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat0 --s sub007 --noedit tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/reg0.4731.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii Tmov: -------------------- -0.700 0.000 0.000 95.889; 0.000 0.000 0.667 -128.000; 0.000 -0.667 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.999 0.042 0.027 0.000; -0.022 -0.107 0.994 0.000; 0.044 -0.993 -0.105 -0.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.999 0.042 0.027 0.000; -0.022 -0.107 0.994 0.000; 0.044 -0.993 -0.105 -0.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = sub007 RegMat --------------------------- 0.999 0.042 0.027 0.000; -0.022 -0.107 0.994 0.000; 0.044 -0.993 -0.105 -0.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -0.311076, ref det = -1 Thu Aug 8 23:42:12 CEST 2013 /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat0 Thu Aug 8 23:46:31 CEST 2013 /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s sub007 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat.fsl.mat --noedit tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.998 0.049 0.030 22.056; 0.035 -0.095 -0.995 264.844; -0.046 0.994 -0.097 16.715; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii Tmov: -------------------- -0.700 0.000 0.000 95.889; 0.000 0.000 0.667 -128.000; 0.000 -0.667 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -0.311076, ref det = -1 ---- Input registration matrix (computed) -------- 0.998 0.046 0.035 0.046; -0.030 -0.097 0.995 0.583; 0.049 -0.994 -0.095 -0.900; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.998 0.046 0.035 0.046; -0.030 -0.097 0.995 0.583; 0.049 -0.994 -0.095 -0.900; 0.000 0.000 0.000 1.000; Determinant 1 subject = sub007 RegMat --------------------------- 0.998 0.046 0.035 0.046; -0.030 -0.097 0.995 0.583; 0.049 -0.994 -0.095 -0.900; 0.000 0.000 0.000 1.000; Started at Thu Aug 8 23:42:05 CEST 2013 Ended at Thu Aug 8 23:52:25 CEST 2013 fslregister Done To check results, run: tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --surf orig mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname snake4 machine x86_64 user fkaule movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.init.dat subject sub007 dof 6 outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1376518834 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 0.046 0.035 0.046; -0.030 -0.097 0.995 0.583; 0.049 -0.994 -0.095 -0.900; 0.000 0.000 0.000 1.000; Loading mov Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 0.991249 1 -25.0 -25.0 25.0 0.991829 2 -25.0 25.0 -25.0 0.986389 3 -25.0 25.0 25.0 1.010019 4 25.0 -25.0 -25.0 1.016478 5 25.0 -25.0 25.0 1.018360 6 25.0 25.0 -25.0 1.026574 7 25.0 25.0 25.0 1.014561 REL: 8 0.193677 8.055460 1.006932 rel = 0.192343 Initial costs ---------------- Number of surface hits 3043 WM Intensity 55.5078 +/- 9.6160 Ctx Intensity 67.6400 +/- 9.7926 Pct Contrast 19.8581 +/- 15.4931 Cost 0.1937 RelCost 0.1923 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9721 0.9721 0.0 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8971 0.8971 0.0 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8774 0.8774 0.0 102 -4.0000 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.8240 0.8240 0.0 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7098 0.7098 0.0 346 0.0000 0.0000 -4.0000 4.0000 0.0000 0.0000 0.6742 0.6742 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1937 0.1937 0.0 Brute Force -------------------------- Min cost was 0.193677 Number of iterations 729 Search time 2.256000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.019 0.000 0.000 0.000 0.000 0.000 0.1934061585 8 -0.104 0.000 0.000 0.000 0.000 0.000 0.1929380224 12 -0.114 0.000 0.000 0.000 0.000 0.000 0.1929257262 14 -0.111 0.000 0.000 0.000 0.000 0.000 0.1929253878 16 -0.112 0.000 0.000 0.000 0.000 0.000 0.1929247277 17 -0.113 0.000 0.000 0.000 0.000 0.000 0.1929246708 24 -0.113 -0.093 0.000 0.000 0.000 0.000 0.1927190348 25 -0.113 -0.055 0.000 0.000 0.000 0.000 0.1923274726 26 -0.113 -0.051 0.000 0.000 0.000 0.000 0.1922827635 27 -0.113 -0.032 0.000 0.000 0.000 0.000 0.1921745445 30 -0.113 -0.033 0.000 0.000 0.000 0.000 0.1921719557 33 -0.113 -0.033 1.000 0.000 0.000 0.000 0.1739615505 37 -0.113 -0.033 0.618 0.000 0.000 0.000 0.1546181828 38 -0.113 -0.033 0.570 0.000 0.000 0.000 0.1536184433 40 -0.113 -0.033 0.553 0.000 0.000 0.000 0.1534524363 41 -0.113 -0.033 0.534 0.000 0.000 0.000 0.1534009548 42 -0.113 -0.033 0.536 0.000 0.000 0.000 0.1533939252 44 -0.113 -0.033 0.538 0.000 0.000 0.000 0.1533923823 52 -0.113 -0.033 0.538 0.174 0.000 0.000 0.1468022854 53 -0.113 -0.033 0.538 0.176 0.000 0.000 0.1467637315 55 -0.113 -0.033 0.538 0.198 0.000 0.000 0.1465500295 56 -0.113 -0.033 0.538 0.199 0.000 0.000 0.1465495950 57 -0.113 -0.033 0.538 0.200 0.000 0.000 0.1465482938 60 -0.113 -0.033 0.538 0.203 0.000 0.000 0.1465402647 70 -0.113 -0.033 0.538 0.203 0.024 0.000 0.1462816922 80 -0.113 -0.033 0.538 0.203 0.024 -0.119 0.1454949850 81 -0.113 -0.033 0.538 0.203 0.024 -0.097 0.1454077122 82 -0.113 -0.033 0.538 0.203 0.024 -0.090 0.1453918823 94 -0.107 -0.033 0.538 0.203 0.024 -0.090 0.1453520159 95 -0.081 -0.033 0.538 0.203 0.024 -0.090 0.1452226094 97 -0.058 -0.033 0.538 0.203 0.024 -0.090 0.1450797534 98 -0.016 -0.033 0.538 0.203 0.024 -0.090 0.1448732974 104 -0.017 -0.033 0.538 0.203 0.024 -0.090 0.1448730636 112 -0.017 0.099 0.538 0.203 0.024 -0.090 0.1421495608 114 -0.017 0.066 0.538 0.203 0.024 -0.090 0.1420170294 116 -0.017 0.078 0.538 0.203 0.024 -0.090 0.1419504451 118 -0.017 0.077 0.538 0.203 0.024 -0.090 0.1419496850 120 -0.017 0.076 0.538 0.203 0.024 -0.090 0.1419482133 128 -0.017 0.076 0.429 0.203 0.024 -0.090 0.1408250796 129 -0.017 0.076 0.444 0.203 0.024 -0.090 0.1406757515 130 -0.017 0.076 0.459 0.203 0.024 -0.090 0.1406291206 133 -0.017 0.076 0.462 0.203 0.024 -0.090 0.1406277824 134 -0.017 0.076 0.461 0.203 0.024 -0.090 0.1406275492 141 -0.017 0.076 0.461 0.244 0.024 -0.090 0.1402854869 142 -0.017 0.076 0.461 0.243 0.024 -0.090 0.1402772088 143 -0.017 0.076 0.461 0.233 0.024 -0.090 0.1401954529 145 -0.017 0.076 0.461 0.229 0.024 -0.090 0.1401783905 146 -0.017 0.076 0.461 0.228 0.024 -0.090 0.1401776098 155 -0.017 0.076 0.461 0.228 -0.008 -0.090 0.1400072837 156 -0.017 0.076 0.461 0.228 -0.007 -0.090 0.1400067285 157 -0.017 0.076 0.461 0.228 -0.006 -0.090 0.1400058131 159 -0.017 0.076 0.461 0.228 -0.001 -0.090 0.1400034554 161 -0.017 0.076 0.461 0.228 -0.003 -0.090 0.1400032237 169 -0.017 0.076 0.461 0.228 -0.003 -0.040 0.1395222284 170 -0.017 0.076 0.461 0.228 -0.003 -0.025 0.1394631486 182 -0.042 0.076 0.461 0.228 -0.003 -0.025 0.1392295453 183 -0.045 0.076 0.461 0.228 -0.003 -0.025 0.1392125962 185 -0.051 0.076 0.461 0.228 -0.003 -0.025 0.1391954150 186 -0.052 0.076 0.461 0.228 -0.003 -0.025 0.1391952674 207 -0.052 0.076 0.437 0.228 -0.003 -0.025 0.1389939393 208 -0.052 0.076 0.436 0.228 -0.003 -0.025 0.1389916174 210 -0.052 0.076 0.434 0.228 -0.003 -0.025 0.1389900252 219 -0.052 0.076 0.434 0.237 -0.003 -0.025 0.1389426087 220 -0.052 0.076 0.434 0.240 -0.003 -0.025 0.1389309996 222 -0.052 0.076 0.434 0.244 -0.003 -0.025 0.1389262283 223 -0.052 0.076 0.434 0.243 -0.003 -0.025 0.1389260747 235 -0.052 0.076 0.434 0.243 -0.007 -0.025 0.1389214808 238 -0.052 0.076 0.434 0.243 -0.008 -0.025 0.1389211114 245 -0.052 0.076 0.434 0.243 -0.008 -0.075 0.1387751442 246 -0.052 0.076 0.434 0.243 -0.008 -0.063 0.1386801727 247 -0.052 0.076 0.434 0.243 -0.008 -0.055 0.1386741770 248 -0.052 0.076 0.434 0.243 -0.008 -0.058 0.1386707715 251 -0.088 0.076 0.406 0.259 -0.013 -0.091 0.1383439096 254 -0.145 0.076 0.362 0.284 -0.021 -0.145 0.1378308224 259 -0.222 0.076 0.303 0.318 -0.032 -0.216 0.1376057260 260 -0.201 0.076 0.319 0.308 -0.029 -0.197 0.1375520973 277 -0.201 0.076 0.319 0.308 -0.029 -0.219 0.1374804300 279 -0.201 0.076 0.319 0.308 -0.029 -0.234 0.1374613638 280 -0.201 0.076 0.319 0.308 -0.029 -0.229 0.1374552182 281 -0.201 0.076 0.319 0.308 -0.029 -0.230 0.1374542155 291 -0.201 0.019 0.319 0.308 -0.029 -0.230 0.1362655158 293 -0.201 0.026 0.319 0.308 -0.029 -0.230 0.1362157040 295 -0.201 0.027 0.319 0.308 -0.029 -0.230 0.1362146064 302 -0.201 0.027 0.288 0.308 -0.029 -0.230 0.1360537655 304 -0.201 0.027 0.294 0.308 -0.029 -0.230 0.1360521244 306 -0.201 0.027 0.292 0.308 -0.029 -0.230 0.1360508154 315 -0.201 0.027 0.292 0.327 -0.029 -0.230 0.1359026204 317 -0.201 0.027 0.292 0.326 -0.029 -0.230 0.1359003914 328 -0.201 0.027 0.292 0.326 0.003 -0.230 0.1351833728 330 -0.201 0.027 0.292 0.326 0.002 -0.230 0.1351805432 332 -0.201 0.027 0.292 0.326 0.001 -0.230 0.1351789449 335 -0.236 0.027 0.264 0.342 -0.004 -0.263 0.1351470756 339 -0.223 0.027 0.275 0.336 -0.002 -0.250 0.1351446910 344 -0.224 0.027 0.274 0.337 -0.002 -0.251 0.1351438076 358 -0.224 0.027 0.274 0.337 -0.002 -0.245 0.1350866132 359 -0.224 0.027 0.274 0.337 -0.002 -0.234 0.1350508134 360 -0.224 0.027 0.274 0.337 -0.002 -0.235 0.1350502326 370 -0.224 0.038 0.274 0.337 -0.002 -0.235 0.1350105739 381 -0.224 0.038 0.267 0.337 -0.002 -0.235 0.1350010105 383 -0.224 0.038 0.268 0.337 -0.002 -0.235 0.1349998244 384 -0.224 0.038 0.269 0.337 -0.002 -0.235 0.1349988486 396 -0.224 0.038 0.269 0.338 -0.002 -0.235 0.1349985664 405 -0.224 0.038 0.269 0.338 0.016 -0.235 0.1348326439 406 -0.224 0.038 0.269 0.338 0.015 -0.235 0.1348291783 407 -0.224 0.038 0.269 0.338 0.013 -0.235 0.1348270992 418 -0.222 0.038 0.271 0.337 0.013 -0.233 0.1348259642 423 -0.222 0.038 0.271 0.337 0.013 -0.233 0.1348259627 425 -0.222 0.038 0.271 0.337 0.013 -0.233 0.1348257670 427 -0.220 0.049 0.268 0.337 0.029 -0.215 0.1347504837 433 -0.221 0.045 0.269 0.337 0.023 -0.222 0.1347441598 434 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347358587 435 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347357220 438 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347354803 442 -0.221 0.047 0.269 0.337 0.026 -0.219 0.1347354483 451 -0.221 0.047 0.269 0.337 0.026 -0.211 0.1347039705 452 -0.221 0.047 0.269 0.337 0.026 -0.209 0.1347034921 471 -0.221 0.047 0.254 0.337 0.026 -0.209 0.1346931341 472 -0.221 0.047 0.260 0.337 0.026 -0.209 0.1346611662 473 -0.221 0.047 0.261 0.337 0.026 -0.209 0.1346598212 483 -0.221 0.047 0.261 0.335 0.026 -0.209 0.1346555090 484 -0.221 0.047 0.261 0.334 0.026 -0.209 0.1346516761 487 -0.221 0.047 0.261 0.333 0.026 -0.209 0.1346507496 495 -0.220 0.047 0.262 0.333 0.026 -0.209 0.1346496957 497 -0.219 0.047 0.262 0.332 0.026 -0.208 0.1346489549 501 -0.219 0.047 0.262 0.332 0.026 -0.208 0.1346486518 509 -0.220 0.044 0.263 0.332 0.022 -0.213 0.1346368280 511 -0.220 0.044 0.263 0.332 0.022 -0.213 0.1346366468 529 -0.220 0.044 0.263 0.332 0.022 -0.212 0.1346322885 530 -0.220 0.044 0.263 0.332 0.022 -0.209 0.1346271251 532 -0.220 0.044 0.263 0.332 0.022 -0.207 0.1346270570 534 -0.220 0.044 0.263 0.332 0.022 -0.208 0.1346263451 546 -0.220 0.045 0.263 0.332 0.022 -0.208 0.1346254968 573 -0.221 0.045 0.262 0.333 0.022 -0.209 0.1346235626 574 -0.222 0.045 0.261 0.333 0.022 -0.210 0.1346228639 575 -0.222 0.045 0.261 0.333 0.022 -0.210 0.1346227487 579 -0.222 0.045 0.261 0.333 0.022 -0.210 0.1346226163 591 -0.222 0.044 0.261 0.333 0.021 -0.211 0.1346225497 592 -0.222 0.044 0.261 0.333 0.021 -0.210 0.1346223234 593 -0.222 0.045 0.261 0.333 0.021 -0.210 0.1346220382 607 -0.222 0.045 0.261 0.333 0.021 -0.209 0.1346214237 628 -0.222 0.045 0.264 0.333 0.021 -0.209 0.1346204271 630 -0.222 0.045 0.263 0.333 0.021 -0.209 0.1346197724 640 -0.222 0.045 0.263 0.332 0.021 -0.209 0.1346193403 650 -0.224 0.045 0.262 0.332 0.021 -0.211 0.1346189424 652 -0.223 0.045 0.262 0.332 0.021 -0.210 0.1346188666 654 -0.223 0.045 0.263 0.332 0.021 -0.210 0.1346187808 656 -0.223 0.045 0.263 0.332 0.021 -0.210 0.1346186327 658 -0.223 0.045 0.263 0.332 0.021 -0.210 0.1346185472 669 -0.223 0.044 0.263 0.332 0.021 -0.210 0.1346184823 671 -0.223 0.044 0.263 0.332 0.021 -0.210 0.1346184437 Powell done niters = 7 Computing relative cost 0 -25.0 -25.0 -25.0 0.978193 1 -25.0 -25.0 25.0 1.003211 2 -25.0 25.0 -25.0 0.997539 3 -25.0 25.0 25.0 1.003521 4 25.0 -25.0 -25.0 1.013809 5 25.0 -25.0 25.0 1.028591 6 25.0 25.0 -25.0 0.995395 7 25.0 25.0 25.0 1.008285 REL: 8 0.134618 8.028544 1.003568 rel = 0.13414 Number of iterations 7 Min cost was 0.134618 Number of FunctionCalls 675 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 1.992000 sec Parameters at optimum (transmm) -0.22291 0.04437 0.26269 Parameters at optimum (rotdeg) 0.33207 0.02092 -0.21016 Final costs ---------------- Number of surface hits 3043 WM Intensity 55.4287 +/- 9.2173 Ctx Intensity 67.2313 +/- 9.3579 Pct Contrast 19.4196 +/- 13.8146 Cost 0.1346 RelCost 0.1923 Reg at min cost was 0.998 0.046 0.038 -0.175; -0.034 -0.091 0.995 0.633; 0.049 -0.995 -0.089 -0.634; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat, type = 14 Original Reg 0.998 0.046 0.035 0.046; -0.030 -0.097 0.995 0.583; 0.049 -0.994 -0.095 -0.900; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 0.001 -0.004 0.221; 0.004 -0.006 -0.000 -0.049; 0.001 0.001 -0.006 -0.266; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.592709 Computing change in rh position Surface RMS Diff (mm) 0.591639 0.872507 mri_segreg done mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/scripts mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname snake4 machine x86_64 user fkaule movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/template.nii regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/tmp.bbregister.4692/bbr.pass1.dat subject sub007 dof 6 outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1376598094 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 0.046 0.038 -0.175; -0.034 -0.091 0.995 0.633; 0.049 -0.995 -0.089 -0.634; 0.000 0.000 0.000 1.000; Loading mov Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.003720 1 -25.0 -25.0 25.0 1.014011 2 -25.0 25.0 -25.0 1.011400 3 -25.0 25.0 25.0 1.010058 4 25.0 -25.0 -25.0 1.022451 5 25.0 -25.0 25.0 1.032368 6 25.0 25.0 -25.0 1.016719 7 25.0 25.0 25.0 1.016638 REL: 8 0.146195 8.127364 1.015920 rel = 0.143904 Initial costs ---------------- Number of surface hits 304307 WM Intensity 55.4986 +/- 9.4676 Ctx Intensity 67.2995 +/- 9.4924 Pct Contrast 19.4061 +/- 14.3630 Cost 0.1462 RelCost 0.1439 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1466 0.1466 0.0 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1430 0.1430 0.0 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1421 0.1421 0.0 18 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1413 0.1413 0.0 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1381 0.1381 0.0 102 -0.1000 0.0000 -0.1000 0.1000 0.0000 -0.1000 0.1364 0.1364 0.0 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1358 0.1358 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1346 0.1346 0.0 Brute Force -------------------------- Min cost was 0.134618 Number of iterations 729 Search time 2.143000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 0.113 0.000 0.000 0.000 0.000 0.000 0.1450895347 8 0.110 0.000 0.000 0.000 0.000 0.000 0.1450858312 9 0.104 0.000 0.000 0.000 0.000 0.000 0.1450844897 11 0.106 0.000 0.000 0.000 0.000 0.000 0.1450841591 20 0.106 0.071 0.000 0.000 0.000 0.000 0.1446850063 21 0.106 0.061 0.000 0.000 0.000 0.000 0.1446593522 22 0.106 0.057 0.000 0.000 0.000 0.000 0.1446579395 31 0.106 0.057 0.106 0.000 0.000 0.000 0.1439143376 32 0.106 0.057 0.091 0.000 0.000 0.000 0.1438930402 34 0.106 0.057 0.093 0.000 0.000 0.000 0.1438928807 43 0.106 0.057 0.093 0.036 0.000 0.000 0.1438125946 44 0.106 0.057 0.093 0.024 0.000 0.000 0.1437849073 53 0.106 0.057 0.093 0.024 -0.084 0.000 0.1427550857 54 0.106 0.057 0.093 0.024 -0.103 0.000 0.1426795413 55 0.106 0.057 0.093 0.024 -0.117 0.000 0.1426586904 56 0.106 0.057 0.093 0.024 -0.121 0.000 0.1426579855 57 0.106 0.057 0.093 0.024 -0.120 0.000 0.1426577427 65 0.106 0.057 0.093 0.024 -0.120 0.055 0.1422166418 67 0.106 0.057 0.093 0.024 -0.120 0.057 0.1422163921 76 0.169 0.057 0.093 0.024 -0.120 0.057 0.1420836601 77 0.151 0.057 0.093 0.024 -0.120 0.057 0.1420548893 78 0.150 0.057 0.093 0.024 -0.120 0.057 0.1420547346 87 0.150 0.071 0.093 0.024 -0.120 0.057 0.1420279277 89 0.150 0.069 0.093 0.024 -0.120 0.057 0.1420276970 98 0.150 0.069 0.089 0.024 -0.120 0.057 0.1420185163 99 0.150 0.069 0.079 0.024 -0.120 0.057 0.1420076535 100 0.150 0.069 0.078 0.024 -0.120 0.057 0.1420072887 101 0.150 0.069 0.075 0.024 -0.120 0.057 0.1420072635 104 0.150 0.069 0.076 0.024 -0.120 0.057 0.1420072037 112 0.150 0.069 0.076 0.028 -0.120 0.057 0.1420046225 122 0.150 0.069 0.076 0.028 -0.126 0.057 0.1419991231 123 0.150 0.069 0.076 0.028 -0.130 0.057 0.1419963952 126 0.150 0.069 0.076 0.028 -0.133 0.057 0.1419958969 135 0.150 0.069 0.076 0.028 -0.133 0.079 0.1419321091 138 0.193 0.082 0.060 0.031 -0.145 0.102 0.1418299848 146 0.196 0.083 0.059 0.032 -0.146 0.103 0.1418299444 148 0.194 0.083 0.060 0.031 -0.146 0.103 0.1418298225 150 0.195 0.083 0.060 0.032 -0.146 0.103 0.1418298160 151 0.195 0.083 0.059 0.032 -0.146 0.103 0.1418297682 163 0.195 0.083 0.059 0.032 -0.146 0.102 0.1418293486 172 0.195 0.073 0.059 0.032 -0.146 0.102 0.1418252952 173 0.195 0.077 0.059 0.032 -0.146 0.102 0.1418238530 183 0.195 0.077 0.070 0.032 -0.146 0.102 0.1418164144 203 0.195 0.077 0.070 0.032 -0.140 0.102 0.1418147057 204 0.195 0.077 0.070 0.032 -0.141 0.102 0.1418146831 205 0.195 0.077 0.070 0.032 -0.142 0.102 0.1418146691 213 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418121060 214 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418121038 215 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418120734 216 0.201 0.078 0.068 0.032 -0.144 0.105 0.1418120708 225 0.201 0.078 0.068 0.032 -0.144 0.104 0.1418120083 235 0.201 0.077 0.068 0.032 -0.144 0.104 0.1418116040 244 0.201 0.077 0.070 0.032 -0.144 0.104 0.1418115243 246 0.201 0.077 0.069 0.032 -0.144 0.104 0.1418114284 264 0.201 0.077 0.069 0.032 -0.141 0.104 0.1418105057 273 0.203 0.077 0.069 0.032 -0.142 0.105 0.1418098875 274 0.204 0.077 0.068 0.032 -0.142 0.106 0.1418094200 277 0.205 0.078 0.068 0.032 -0.142 0.106 0.1418093614 278 0.205 0.078 0.068 0.032 -0.142 0.106 0.1418093170 300 0.205 0.077 0.068 0.032 -0.142 0.106 0.1418092649 311 0.205 0.077 0.069 0.032 -0.142 0.106 0.1418092468 330 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418091360 339 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418090722 343 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418090189 405 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418089950 409 0.205 0.077 0.069 0.032 -0.141 0.106 0.1418089946 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.004926 1 -25.0 -25.0 25.0 1.013640 2 -25.0 25.0 -25.0 1.012322 3 -25.0 25.0 25.0 1.009514 4 25.0 -25.0 -25.0 1.021360 5 25.0 -25.0 25.0 1.032719 6 25.0 25.0 -25.0 1.018272 7 25.0 25.0 25.0 1.018092 REL: 8 0.141809 8.130844 1.016356 rel = 0.139527 Number of iterations 6 Min cost was 0.141809 Number of FunctionCalls 472 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 57.287000 sec Parameters at optimum (transmm) 0.20508 0.07676 0.06874 Parameters at optimum (rotdeg) 0.03240 -0.14135 0.10713 Final costs ---------------- Number of surface hits 304307 WM Intensity 55.5048 +/- 9.5055 Ctx Intensity 67.3034 +/- 9.4884 Pct Contrast 19.4056 +/- 14.3131 Cost 0.1418 RelCost 0.1439 Reg at min cost was 0.998 0.048 0.037 0.030; -0.032 -0.090 0.995 0.710; 0.051 -0.995 -0.089 -0.565; 0.000 0.000 0.000 1.000; Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat, type = 14 Original Reg 0.998 0.046 0.038 -0.175; -0.034 -0.091 0.995 0.633; 0.049 -0.995 -0.089 -0.634; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.003 0.002 -0.205; -0.002 -0.001 -0.000 -0.077; -0.002 -0.000 -0.001 -0.069; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.133062 Computing change in rh position Surface RMS Diff (mm) 0.190373 0.408394 mri_segreg done tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.lta tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.998 0.048 0.037 0.030; -0.032 -0.090 0.995 0.710; 0.051 -0.995 -0.089 -0.565; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz Tmov: -------------------- -0.700 0.000 0.000 95.889; 0.000 0.000 0.667 -128.000; 0.000 -0.667 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.998 0.048 0.037 0.030; -0.032 -0.090 0.995 0.710; 0.051 -0.995 -0.089 -0.565; 0.000 0.000 0.000 1.000; Determinant 1 subject = sub007 RegMat --------------------------- 0.998 0.048 0.037 0.030; -0.032 -0.090 0.995 0.710; 0.051 -0.995 -0.089 -0.565; 0.000 0.000 0.000 1.000; transformed matrix: 1.000 -0.006 -0.011 -0.131; 0.006 1.000 0.016 -0.013; 0.011 -0.016 1.000 -0.292; 0.000 0.000 0.000 1.000; transformed matrix: 0.699 0.034 0.022 21.553; 0.026 -0.059 -0.664 263.990; -0.034 0.663 -0.060 16.377; 0.000 0.000 0.000 1.000; Cleaning up Started at Thu Aug 8 23:42:01 CEST 2013 Ended at Thu Aug 8 23:54:16 CEST 2013 BBR-Run-Time-Sec 735 bbregister Done To check results, run: tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub007/mri/transforms/T2raw.dat --surf