cortical-surfaces-freesurfer/sub-03/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat
subject sub003
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376293067
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.051  -0.029   0.075;
 0.029   0.013   1.000   0.411;
 0.051  -0.999   0.011   0.109;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 240423
WM  Intensity0    64.9359 +/-  11.1877
Ctx Intensity0    79.7729 +/-  12.9062
Pct Contrast0     20.4782 +/-  13.8817
Cost   0.1335
RelCost   0.1304

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1323   0.1323  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1284   0.1284  0.0
    21  -0.1000  -0.1000  -0.1000   0.1000   0.0000  -0.1000      0.1280   0.1280  0.0
    99  -0.1000   0.0000  -0.1000   0.1000  -0.1000  -0.1000      0.1271   0.1271  0.0

Final costs ----------------
Number of surface hits 240423
WM  Intensity0    64.9338 +/-  11.2144
Ctx Intensity0    79.7146 +/-  12.8242
Pct Contrast0     20.4261 +/-  13.7529
Cost   0.1269
RelCost   0.1304
Number of iterations     7
Min cost was 0.126885
RelMinCost   0.1239
Number of FunctionCalls   534
OptimizationTime 62.002000 sec
Parameters at optimum (transmm, rotdeg)
-0.00261  0.10287 -0.27464  0.19921 -0.03618 -0.03386 
Number of surface hits 240423
WM  Intensity    64.9338 +/-  11.2144
Ctx Intensity    79.7146 +/-  12.8242
Pct Contrast     20.4261 +/-  13.7529
Cost at optimum   0.1269
RelCostOptimum   0.1239
nhits= 240423 wmmn=   64.9338 wmstd= 11.2144 constd=   13.7529 ctxmn=   79.7146 ctxstd= 12.8242 conmn =  20.4261 costmn =   0.1269 
#C#  -0.003   0.103  -0.275  0.199 -0.036 -0.034 0.000000 0.000000 0.126885 64.933850 79.714626 20.426140 0.000000 0.500000     1 0
Reg at min cost was 
 0.998   0.052  -0.029   0.073;
 0.028   0.016   0.999   0.513;
 0.052  -0.999   0.015  -0.164;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
 0.000  -0.001  -0.001   0.002;
 0.001  -0.003   0.000  -0.102;
-0.001  -0.000  -0.003   0.273;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.199717 0.396121