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- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat
- subject sub003
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376293067
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.051 -0.029 0.075;
- 0.029 0.013 1.000 0.411;
- 0.051 -0.999 0.011 0.109;
- 0.000 0.000 0.000 1.000;
- Initial costs ----------------
- Number of surface hits 240423
- WM Intensity0 64.9359 +/- 11.1877
- Ctx Intensity0 79.7729 +/- 12.9062
- Pct Contrast0 20.4782 +/- 13.8817
- Cost 0.1335
- RelCost 0.1304
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1323 0.1323 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1284 0.1284 0.0
- 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1280 0.1280 0.0
- 99 -0.1000 0.0000 -0.1000 0.1000 -0.1000 -0.1000 0.1271 0.1271 0.0
- Final costs ----------------
- Number of surface hits 240423
- WM Intensity0 64.9338 +/- 11.2144
- Ctx Intensity0 79.7146 +/- 12.8242
- Pct Contrast0 20.4261 +/- 13.7529
- Cost 0.1269
- RelCost 0.1304
- Number of iterations 7
- Min cost was 0.126885
- RelMinCost 0.1239
- Number of FunctionCalls 534
- OptimizationTime 62.002000 sec
- Parameters at optimum (transmm, rotdeg)
- -0.00261 0.10287 -0.27464 0.19921 -0.03618 -0.03386
- Number of surface hits 240423
- WM Intensity 64.9338 +/- 11.2144
- Ctx Intensity 79.7146 +/- 12.8242
- Pct Contrast 20.4261 +/- 13.7529
- Cost at optimum 0.1269
- RelCostOptimum 0.1239
- nhits= 240423 wmmn= 64.9338 wmstd= 11.2144 constd= 13.7529 ctxmn= 79.7146 ctxstd= 12.8242 conmn = 20.4261 costmn = 0.1269
- #C# -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.000000 0.000000 0.126885 64.933850 79.714626 20.426140 0.000000 0.500000 1 0
- Reg at min cost was
- 0.998 0.052 -0.029 0.073;
- 0.028 0.016 0.999 0.513;
- 0.052 -0.999 0.015 -0.164;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 -0.001 -0.001 0.002;
- 0.001 -0.003 0.000 -0.102;
- -0.001 -0.000 -0.003 0.273;
- 0.000 0.000 0.000 0.000;
- Surface RMS Diff (mm) 0.199717 0.396121
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