cortical-surfaces-freesurfer/sub-02/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat
subject sub002
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376706176
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.999  -0.022  -0.034  -0.249;
 0.032  -0.098   0.995   0.538;
-0.026  -0.995  -0.098  -0.358;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 306067
WM  Intensity0    57.2975 +/-   8.3244
Ctx Intensity0    69.4291 +/-   8.7579
Pct Contrast0     19.2108 +/-  14.0392
Cost   0.1605
RelCost   0.1582

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1584   0.1584  0.0
     1  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000   0.0000      0.1579   0.1579  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1559   0.1559  0.0
     6  -0.1000  -0.1000  -0.1000  -0.1000   0.1000  -0.1000      0.1548   0.1548  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1511   0.1511  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1491   0.1491  0.0
    19  -0.1000  -0.1000  -0.1000   0.1000  -0.1000   0.0000      0.1464   0.1464  0.0
    22  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1457   0.1457  0.0
    46  -0.1000  -0.1000   0.0000   0.1000  -0.1000   0.0000      0.1446   0.1446  0.0
    49  -0.1000  -0.1000   0.0000   0.1000   0.0000   0.0000      0.1423   0.1423  0.0
   293   0.0000  -0.1000   0.0000   0.1000   0.0000   0.1000      0.1422   0.1422  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1410   0.1410  0.0

Final costs ----------------
Number of surface hits 306067
WM  Intensity0    57.2881 +/-   8.2908
Ctx Intensity0    69.4207 +/-   8.7837
Pct Contrast0     19.2072 +/-  13.9822
Cost   0.1574
RelCost   0.1582
Number of iterations     9
Min cost was 0.157440
RelMinCost   0.1550
Number of FunctionCalls   706
OptimizationTime 96.378000 sec
Parameters at optimum (transmm, rotdeg)
-0.00715 -0.04306 -0.15259  0.11330  0.00929  0.04876 
Number of surface hits 306067
WM  Intensity    57.2881 +/-   8.2908
Ctx Intensity    69.4207 +/-   8.7837
Pct Contrast     19.2072 +/-  13.9822
Cost at optimum   0.1574
RelCostOptimum   0.1550
nhits= 306067 wmmn=   57.2881 wmstd=  8.2908 constd=   13.9822 ctxmn=   69.4207 ctxstd=  8.7837 conmn =  19.2072 costmn =   0.1574 
#C#  -0.007  -0.043  -0.153  0.113  0.009  0.049 0.000000 0.000000 0.157440 57.288118 69.420736 19.207172 0.000000 0.500000     1 0
Reg at min cost was 
 0.999  -0.022  -0.035  -0.256;
 0.033  -0.096   0.995   0.495;
-0.026  -0.995  -0.096  -0.509;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
 0.000   0.000   0.001   0.008;
-0.001  -0.002  -0.000   0.043;
 0.000   0.000  -0.002   0.151;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.145179 0.292914