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- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat
- subject sub002
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376706176
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.022 -0.034 -0.249;
- 0.032 -0.098 0.995 0.538;
- -0.026 -0.995 -0.098 -0.358;
- 0.000 0.000 0.000 1.000;
- Initial costs ----------------
- Number of surface hits 306067
- WM Intensity0 57.2975 +/- 8.3244
- Ctx Intensity0 69.4291 +/- 8.7579
- Pct Contrast0 19.2108 +/- 14.0392
- Cost 0.1605
- RelCost 0.1582
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1584 0.1584 0.0
- 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1579 0.1579 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1559 0.1559 0.0
- 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.1548 0.1548 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1511 0.1511 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1491 0.1491 0.0
- 19 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.0000 0.1464 0.1464 0.0
- 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1457 0.1457 0.0
- 46 -0.1000 -0.1000 0.0000 0.1000 -0.1000 0.0000 0.1446 0.1446 0.0
- 49 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1423 0.1423 0.0
- 293 0.0000 -0.1000 0.0000 0.1000 0.0000 0.1000 0.1422 0.1422 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1410 0.1410 0.0
- Final costs ----------------
- Number of surface hits 306067
- WM Intensity0 57.2881 +/- 8.2908
- Ctx Intensity0 69.4207 +/- 8.7837
- Pct Contrast0 19.2072 +/- 13.9822
- Cost 0.1574
- RelCost 0.1582
- Number of iterations 9
- Min cost was 0.157440
- RelMinCost 0.1550
- Number of FunctionCalls 706
- OptimizationTime 96.378000 sec
- Parameters at optimum (transmm, rotdeg)
- -0.00715 -0.04306 -0.15259 0.11330 0.00929 0.04876
- Number of surface hits 306067
- WM Intensity 57.2881 +/- 8.2908
- Ctx Intensity 69.4207 +/- 8.7837
- Pct Contrast 19.2072 +/- 13.9822
- Cost at optimum 0.1574
- RelCostOptimum 0.1550
- nhits= 306067 wmmn= 57.2881 wmstd= 8.2908 constd= 13.9822 ctxmn= 69.4207 ctxstd= 8.7837 conmn = 19.2072 costmn = 0.1574
- #C# -0.007 -0.043 -0.153 0.113 0.009 0.049 0.000000 0.000000 0.157440 57.288118 69.420736 19.207172 0.000000 0.500000 1 0
- Reg at min cost was
- 0.999 -0.022 -0.035 -0.256;
- 0.033 -0.096 0.995 0.495;
- -0.026 -0.995 -0.096 -0.509;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 0.000 0.001 0.008;
- -0.001 -0.002 -0.000 0.043;
- 0.000 0.000 -0.002 0.151;
- 0.000 0.000 0.000 0.000;
- Surface RMS Diff (mm) 0.145179 0.292914
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