cortical-surfaces-freesurfer/sub-02/mri/transforms/T2raw.dat.log

Logfile for bbregister
Thu Aug  8 23:21:02 CEST 2013

setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
/opt/freesurfer/5.3.0/bin/bbregister --s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.lta --init-fsl --T2

$Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
FREESURFER_HOME /opt/freesurfer/5.3.0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.999032, 0.0218052, 0.0381938)
j_ras = (0.0265301, 0.991428, 0.127932)
k_ras = (0.0350768, -0.128822, 0.991047)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii...
fslregister --s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister --dof 6 --fsvol brainmask.mgz

Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fslregister.log

Thu Aug  8 23:21:08 CEST 2013
--s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister --dof 6 --fsvol brainmask.mgz
$Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
snake5
Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
nIters 1
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/brainmask.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 4.19095e-09, 0)
j_ras = (0, 1.49012e-08, -1)
k_ras = (0, 1, 0)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii...
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii --frame 0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii --frame 0 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.999032, 0.0218052, 0.0381938)
j_ras = (0.0265301, 0.991428, 0.127932)
k_ras = (0.0350768, -0.128822, 0.991047)
keeping frame 0
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii...
Mov determinant is -0.311049
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/reg0.19435.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat0 --s sub002 --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/reg0.19435.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii
Tmov: --------------------
-0.700   0.000   0.000   95.881;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 1, float2int = 0
Computing reg from header (and possibly input matrix)
---- Input registration matrix (computed) --------
 0.999  -0.022  -0.038   0.000;
 0.035  -0.129   0.991  -0.000;
-0.027  -0.991  -0.128   0.000;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.999  -0.022  -0.038   0.000;
 0.035  -0.129   0.991  -0.000;
-0.027  -0.991  -0.128   0.000;
 0.000   0.000   0.000   1.000;
Determinant 0.999999
subject = sub002
RegMat ---------------------------
 0.999  -0.022  -0.038   0.000;
 0.035  -0.129   0.991  -0.000;
-0.027  -0.991  -0.128   0.000;
 0.000   0.000   0.000   1.000;
FSLOUTPUTTYPE NIFTI 
tkreg2FSL: mov det = -0.311049, ref det = -1
Thu Aug  8 23:21:18 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat0
Thu Aug  8 23:25:42 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
tkregister2_cmdl --s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
---- FSL registration matrix --------
 0.999  -0.028  -0.022   38.022;
-0.025  -0.094  -0.995   271.186;
 0.025   0.995  -0.095   8.808;
 0.000   0.000   0.000   1.000;
---------------------------------------
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
Tmov: --------------------
-0.700   0.000   0.000   95.881;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
FSLOUTPUTTYPE NIFTI 
fsl2TkReg: mov det = -0.311049, ref det = -1
---- Input registration matrix (computed) --------
 0.999  -0.025  -0.025  -0.620;
 0.022  -0.095   0.995   1.194;
-0.028  -0.995  -0.094  -1.620;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.999  -0.025  -0.025  -0.620;
 0.022  -0.095   0.995   1.194;
-0.028  -0.995  -0.094  -1.620;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub002
RegMat ---------------------------
 0.999  -0.025  -0.025  -0.620;
 0.022  -0.095   0.995   1.194;
-0.028  -0.995  -0.094  -1.620;
 0.000   0.000   0.000   1.000;
 
Started at Thu Aug 8 23:21:08 CEST 2013 
Ended   at Thu Aug  8 23:31:41 CEST 2013
 
fslregister Done
 
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --surf orig
 
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat
subject sub002
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 100
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000100
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376450912
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.999  -0.025  -0.025  -0.620;
 0.022  -0.095   0.995   1.194;
-0.028  -0.995  -0.094  -1.620;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   1.045212
 1  -25.0 -25.0  25.0   1.003322
 2  -25.0  25.0 -25.0   1.007902
 3  -25.0  25.0  25.0   1.026935
 4   25.0 -25.0 -25.0   1.013771
 5   25.0 -25.0  25.0   1.061154
 6   25.0  25.0 -25.0   1.023364
 7   25.0  25.0  25.0   1.010720
REL:  8  0.315800    8.192379  1.024047 rel = 0.308384 
Initial costs ----------------
Number of surface hits 3047
WM  Intensity    57.8110 +/-   8.6409
Ctx Intensity    70.0825 +/-  11.1034
Pct Contrast     18.8163 +/-  18.7598
Cost   0.3158
RelCost   0.3084

------------------------------------
Brute force preopt -4 4 4, n = 729
     0  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000      0.9581   0.9581  0.0
    15  -4.0000  -4.0000  -4.0000   0.0000   4.0000  -4.0000      0.8927   0.8927  0.0
    21  -4.0000  -4.0000  -4.0000   4.0000   0.0000  -4.0000      0.8505   0.8505  0.0
    39  -4.0000  -4.0000   0.0000   0.0000   0.0000  -4.0000      0.8266   0.8266  0.0
   120  -4.0000   0.0000   0.0000   0.0000   0.0000  -4.0000      0.7720   0.7720  0.0
   301   0.0000  -4.0000   4.0000  -4.0000   0.0000   0.0000      0.7307   0.7307  0.0
   346   0.0000   0.0000  -4.0000   4.0000   0.0000   0.0000      0.7154   0.7154  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.3158   0.3158  0.0
Brute Force --------------------------
Min cost was 0.315800
Number of iterations   729
Search time 2.638000 sec
Parameters at best (transmm, rotdeg)
  0.000   0.000   0.000  0.000  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 0
1 0
2 0
3 0
4 0
5 0
   7 -0.038  0.000  0.000  0.000  0.000  0.000   0.3141953586
   9 -0.089  0.000  0.000  0.000  0.000  0.000   0.3140502370
  10 -0.067  0.000  0.000  0.000  0.000  0.000   0.3137921398
  11 -0.066  0.000  0.000  0.000  0.000  0.000   0.3137911513
  17 -0.066 -0.618  0.000  0.000  0.000  0.000   0.2756750169
  19 -0.066 -0.587  0.000  0.000  0.000  0.000   0.2751719787
  22 -0.066 -0.583  0.000  0.000  0.000  0.000   0.2751619203
  26 -0.066 -0.583  1.000  0.000  0.000  0.000   0.1754425269
  31 -0.066 -0.583  1.102  0.000  0.000  0.000   0.1711928032
  33 -0.066 -0.583  1.196  0.000  0.000  0.000   0.1698448987
  34 -0.066 -0.583  1.197  0.000  0.000  0.000   0.1698422257
  35 -0.066 -0.583  1.207  0.000  0.000  0.000   0.1698337980
  37 -0.066 -0.583  1.204  0.000  0.000  0.000   0.1698317278
  38 -0.066 -0.583  1.203  0.000  0.000  0.000   0.1698315153
  39 -0.066 -0.583  1.202  0.000  0.000  0.000   0.1698312767
  41 -0.066 -0.583  1.201  0.000  0.000  0.000   0.1698309996
  48 -0.066 -0.583  1.201 -0.143  0.000  0.000   0.1646940319
  50 -0.066 -0.583  1.201 -0.125  0.000  0.000   0.1644750936
  53 -0.066 -0.583  1.201 -0.112  0.000  0.000   0.1644734824
  54 -0.066 -0.583  1.201 -0.118  0.000  0.000   0.1644524372
  55 -0.066 -0.583  1.201 -0.119  0.000  0.000   0.1644516281
  63 -0.066 -0.583  1.201 -0.119 -0.087  0.000   0.1642141626
  67 -0.066 -0.583  1.201 -0.119 -0.116  0.000   0.1640114329
  69 -0.066 -0.583  1.201 -0.119 -0.111  0.000   0.1639960182
  77 -0.066 -0.583  1.201 -0.119 -0.111  0.382   0.1597704919
  82 -0.066 -0.583  1.201 -0.119 -0.111  0.387   0.1597694456
  83 -0.066 -0.583  1.201 -0.119 -0.111  0.385   0.1597666659
  92  0.316 -0.583  1.201 -0.119 -0.111  0.385   0.1479585072
  93  0.282 -0.583  1.201 -0.119 -0.111  0.385   0.1479536807
  97  0.263 -0.583  1.201 -0.119 -0.111  0.385   0.1479532345
  98  0.268 -0.583  1.201 -0.119 -0.111  0.385   0.1479499926
  99  0.273 -0.583  1.201 -0.119 -0.111  0.385   0.1479497019
 100  0.271 -0.583  1.201 -0.119 -0.111  0.385   0.1479482908
 108  0.271 -0.651  1.201 -0.119 -0.111  0.385   0.1472668685
 109  0.271 -0.655  1.201 -0.119 -0.111  0.385   0.1472428043
 111  0.271 -0.692  1.201 -0.119 -0.111  0.385   0.1470721936
 114  0.271 -0.690  1.201 -0.119 -0.111  0.385   0.1470695059
 116  0.271 -0.689  1.201 -0.119 -0.111  0.385   0.1470688066
 124  0.271 -0.689  1.205 -0.119 -0.111  0.385   0.1470313978
 125  0.271 -0.689  1.242 -0.119 -0.111  0.385   0.1467459901
 128  0.271 -0.689  1.236 -0.119 -0.111  0.385   0.1467363085
 137  0.271 -0.689  1.236 -0.135 -0.111  0.385   0.1464510371
 138  0.271 -0.689  1.236 -0.181 -0.111  0.385   0.1462013748
 140  0.271 -0.689  1.236 -0.171 -0.111  0.385   0.1461816849
 141  0.271 -0.689  1.236 -0.172 -0.111  0.385   0.1461805886
 153  0.271 -0.689  1.236 -0.172 -0.115  0.385   0.1461751148
 154  0.271 -0.689  1.236 -0.172 -0.116  0.385   0.1461750893
 162  0.271 -0.689  1.236 -0.172 -0.116  0.481   0.1452244900
 163  0.271 -0.689  1.236 -0.172 -0.116  0.475   0.1452053737
 165  0.271 -0.689  1.236 -0.172 -0.116  0.474   0.1452050146
 174  0.321 -0.689  1.236 -0.172 -0.116  0.474   0.1443831908
 175  0.350 -0.689  1.236 -0.172 -0.116  0.474   0.1440496667
 179  0.356 -0.689  1.236 -0.172 -0.116  0.474   0.1440469570
 180  0.354 -0.689  1.236 -0.172 -0.116  0.474   0.1440446627
 181  0.353 -0.689  1.236 -0.172 -0.116  0.474   0.1440445955
 189  0.353 -0.657  1.236 -0.172 -0.116  0.474   0.1431075845
 191  0.353 -0.637  1.236 -0.172 -0.116  0.474   0.1426990985
 193  0.353 -0.635  1.236 -0.172 -0.116  0.474   0.1426940237
 203  0.353 -0.635  1.294 -0.172 -0.116  0.474   0.1426287709
 205  0.353 -0.635  1.267 -0.172 -0.116  0.474   0.1423279907
 207  0.353 -0.635  1.270 -0.172 -0.116  0.474   0.1423240408
 209  0.353 -0.635  1.269 -0.172 -0.116  0.474   0.1423230640
 219  0.353 -0.635  1.269 -0.184 -0.116  0.474   0.1421965462
 220  0.353 -0.635  1.269 -0.195 -0.116  0.474   0.1421919782
 221  0.353 -0.635  1.269 -0.190 -0.116  0.474   0.1421769936
 223  0.353 -0.635  1.269 -0.191 -0.116  0.474   0.1421761423
 235  0.353 -0.635  1.269 -0.191 -0.120  0.474   0.1421721305
 236  0.353 -0.635  1.269 -0.191 -0.118  0.474   0.1421696081
 244  0.353 -0.635  1.269 -0.191 -0.118  0.532   0.1415484783
 245  0.353 -0.635  1.269 -0.191 -0.118  0.542   0.1414569684
 249  0.353 -0.635  1.269 -0.191 -0.118  0.548   0.1414469491
 251  0.353 -0.635  1.269 -0.191 -0.118  0.550   0.1414460173
 253  0.353 -0.635  1.269 -0.191 -0.118  0.549   0.1414459261
 263  0.375 -0.635  1.269 -0.191 -0.118  0.549   0.1412665385
 264  0.372 -0.635  1.269 -0.191 -0.118  0.549   0.1412527009
 265  0.370 -0.635  1.269 -0.191 -0.118  0.549   0.1412521634
 275  0.370 -0.646  1.269 -0.191 -0.118  0.549   0.1411436862
 276  0.370 -0.648  1.269 -0.191 -0.118  0.549   0.1411432667
 296  0.370 -0.648  1.269 -0.185 -0.118  0.549   0.1411159889
 297  0.370 -0.648  1.269 -0.184 -0.118  0.549   0.1411140306
 298  0.370 -0.648  1.269 -0.181 -0.118  0.549   0.1411132437
 301  0.370 -0.648  1.269 -0.182 -0.118  0.549   0.1411126876
 310  0.370 -0.648  1.269 -0.182 -0.122  0.549   0.1410933128
 312  0.370 -0.648  1.269 -0.182 -0.124  0.549   0.1410913296
 322  0.370 -0.648  1.269 -0.182 -0.124  0.566   0.1410126710
 323  0.370 -0.648  1.269 -0.182 -0.124  0.564   0.1410103861
 334  0.378 -0.648  1.269 -0.182 -0.124  0.564   0.1409838751
 336  0.380 -0.648  1.269 -0.182 -0.124  0.564   0.1409838716
 339  0.379 -0.648  1.269 -0.182 -0.124  0.564   0.1409830254
 349  0.379 -0.646  1.269 -0.182 -0.124  0.564   0.1409792329
 359  0.379 -0.646  1.266 -0.182 -0.124  0.564   0.1409789909
 361  0.379 -0.646  1.267 -0.182 -0.124  0.564   0.1409778129
 373  0.379 -0.646  1.267 -0.185 -0.124  0.564   0.1409715915
 387  0.379 -0.646  1.267 -0.185 -0.125  0.564   0.1409707488
 398  0.379 -0.646  1.267 -0.185 -0.125  0.570   0.1409646826
 410  0.380 -0.646  1.267 -0.185 -0.125  0.570   0.1409638042
 421  0.380 -0.645  1.267 -0.185 -0.125  0.570   0.1409606695
 443  0.380 -0.645  1.267 -0.186 -0.125  0.570   0.1409603982
 453  0.380 -0.645  1.267 -0.186 -0.124  0.570   0.1409583581
 454  0.380 -0.645  1.267 -0.186 -0.123  0.570   0.1409575415
 465  0.380 -0.645  1.267 -0.186 -0.123  0.571   0.1409573469
Powell done niters = 5
Computing relative cost
 0  -25.0 -25.0 -25.0   0.995672
 1  -25.0 -25.0  25.0   1.042601
 2  -25.0  25.0 -25.0   1.011952
 3  -25.0  25.0  25.0   1.001417
 4   25.0 -25.0 -25.0   1.005375
 5   25.0 -25.0  25.0   1.030164
 6   25.0  25.0 -25.0   1.026341
 7   25.0  25.0  25.0   1.008419
REL:  8  0.140957    8.121942  1.015243 rel = 0.138841 
Number of iterations     5
Min cost was 0.140957
Number of FunctionCalls   467
TolPowell 0.000100
nMaxItersPowell 36
OptimizationTime 1.789000 sec
Parameters at optimum (transmm)  0.38005 -0.64469  1.26704
Parameters at optimum (rotdeg) -0.18598 -0.12277  0.57063 
Final costs ----------------
Number of surface hits 3047
WM  Intensity    56.9871 +/-   7.9749
Ctx Intensity    69.4327 +/-   8.6816
Pct Contrast     19.7210 +/-  13.7119
Cost   0.1410
RelCost   0.3084
Reg at min cost was 
 0.999  -0.022  -0.034  -0.249;
 0.032  -0.098   0.995   0.538;
-0.026  -0.995  -0.098  -0.358;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat, type = 14 
Original Reg 
 0.999  -0.025  -0.025  -0.620;
 0.022  -0.095   0.995   1.194;
-0.028  -0.995  -0.094  -1.620;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
 0.000  -0.003   0.010  -0.372;
-0.010   0.003   0.001   0.656;
-0.002  -0.000   0.003  -1.262;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 1.418080
Computing change in rh position
Surface RMS Diff (mm) 1.349605 1.734044
mri_segreg done
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat
subject sub002
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376706176
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.999  -0.022  -0.034  -0.249;
 0.032  -0.098   0.995   0.538;
-0.026  -0.995  -0.098  -0.358;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   1.005681
 1  -25.0 -25.0  25.0   1.001206
 2  -25.0  25.0 -25.0   1.012760
 3  -25.0  25.0  25.0   1.019027
 4   25.0 -25.0 -25.0   1.023239
 5   25.0 -25.0  25.0   1.021860
 6   25.0  25.0 -25.0   1.018151
 7   25.0  25.0  25.0   1.018750
REL:  8  0.160538    8.120674  1.015084 rel = 0.158153 
Initial costs ----------------
Number of surface hits 306067
WM  Intensity    57.2975 +/-   8.3244
Ctx Intensity    69.4291 +/-   8.7579
Pct Contrast     19.2108 +/-  14.0392
Cost   0.1605
RelCost   0.1582

------------------------------------
Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1584   0.1584  0.0
     1  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000   0.0000      0.1579   0.1579  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1559   0.1559  0.0
     6  -0.1000  -0.1000  -0.1000  -0.1000   0.1000  -0.1000      0.1548   0.1548  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1511   0.1511  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1491   0.1491  0.0
    19  -0.1000  -0.1000  -0.1000   0.1000  -0.1000   0.0000      0.1464   0.1464  0.0
    22  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1457   0.1457  0.0
    46  -0.1000  -0.1000   0.0000   0.1000  -0.1000   0.0000      0.1446   0.1446  0.0
    49  -0.1000  -0.1000   0.0000   0.1000   0.0000   0.0000      0.1423   0.1423  0.0
   293   0.0000  -0.1000   0.0000   0.1000   0.0000   0.1000      0.1422   0.1422  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1410   0.1410  0.0
Brute Force --------------------------
Min cost was 0.140957
Number of iterations   729
Search time 2.641000 sec
Parameters at best (transmm, rotdeg)
  0.000   0.000   0.000  0.000  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 0
1 0
2 0
3 0
4 0
5 0
   8 -0.025  0.000  0.000  0.000  0.000  0.000   0.1604698779
  11 -0.026  0.000  0.000  0.000  0.000  0.000   0.1604692307
  12 -0.027  0.000  0.000  0.000  0.000  0.000   0.1604690775
  20 -0.027 -0.085  0.000  0.000  0.000  0.000   0.1599344056
  21 -0.027 -0.069  0.000  0.000  0.000  0.000   0.1598841461
  22 -0.027 -0.066  0.000  0.000  0.000  0.000   0.1598820851
  23 -0.027 -0.065  0.000  0.000  0.000  0.000   0.1598819801
  31 -0.027 -0.065 -0.050  0.000  0.000  0.000   0.1594113639
  32 -0.027 -0.065 -0.083  0.000  0.000  0.000   0.1593761960
  33 -0.027 -0.065 -0.072  0.000  0.000  0.000   0.1593607907
  34 -0.027 -0.065 -0.071  0.000  0.000  0.000   0.1593605731
  35 -0.027 -0.065 -0.070  0.000  0.000  0.000   0.1593605096
  44 -0.027 -0.065 -0.070  0.096  0.000  0.000   0.1582018373
  45 -0.027 -0.065 -0.070  0.083  0.000  0.000   0.1581597755
  46 -0.027 -0.065 -0.070  0.081  0.000  0.000   0.1581593829
  48 -0.027 -0.065 -0.070  0.082  0.000  0.000   0.1581592468
  56 -0.027 -0.065 -0.070  0.082  0.009  0.000   0.1581555923
  57 -0.027 -0.065 -0.070  0.082  0.007  0.000   0.1581551333
  68 -0.027 -0.065 -0.070  0.082  0.007  0.031   0.1580046776
  70 -0.027 -0.065 -0.070  0.082  0.007  0.039   0.1580007565
  71 -0.027 -0.065 -0.070  0.082  0.007  0.037   0.1579999205
  72 -0.027 -0.065 -0.070  0.082  0.007  0.036   0.1579999029
  82 -0.016 -0.065 -0.070  0.082  0.007  0.036   0.1579976067
  83 -0.020 -0.065 -0.070  0.082  0.007  0.036   0.1579957129
  84 -0.021 -0.065 -0.070  0.082  0.007  0.036   0.1579953629
  86 -0.022 -0.065 -0.070  0.082  0.007  0.036   0.1579952922
  93 -0.022 -0.051 -0.070  0.082  0.007  0.036   0.1579751893
  94 -0.022 -0.050 -0.070  0.082  0.007  0.036   0.1579748305
  95 -0.022 -0.049 -0.070  0.082  0.007  0.036   0.1579745553
 104 -0.022 -0.049 -0.112  0.082  0.007  0.036   0.1576380933
 105 -0.022 -0.049 -0.139  0.082  0.007  0.036   0.1576224577
 106 -0.022 -0.049 -0.129  0.082  0.007  0.036   0.1576082843
 115 -0.022 -0.049 -0.129  0.127  0.007  0.036   0.1575930703
 116 -0.022 -0.049 -0.129  0.105  0.007  0.036   0.1574967914
 117 -0.022 -0.049 -0.129  0.104  0.007  0.036   0.1574965506
 127 -0.022 -0.049 -0.129  0.104  0.008  0.036   0.1574965050
 138 -0.022 -0.049 -0.129  0.104  0.008  0.038   0.1574956748
 147 -0.020 -0.042 -0.151  0.113  0.008  0.039   0.1574506786
 148 -0.020 -0.042 -0.152  0.113  0.008  0.039   0.1574505847
 150 -0.020 -0.042 -0.152  0.113  0.008  0.039   0.1574505287
 161 -0.011 -0.042 -0.152  0.113  0.008  0.039   0.1574457183
 162 -0.012 -0.042 -0.152  0.113  0.008  0.039   0.1574455433
 163 -0.013 -0.042 -0.152  0.113  0.008  0.039   0.1574454586
 173 -0.013 -0.040 -0.152  0.113  0.008  0.039   0.1574453159
 174 -0.013 -0.039 -0.152  0.113  0.008  0.039   0.1574453127
 184 -0.013 -0.039 -0.152  0.113  0.008  0.047   0.1574429504
 185 -0.013 -0.039 -0.152  0.113  0.008  0.045   0.1574422983
 203 -0.013 -0.039 -0.152  0.113  0.009  0.045   0.1574421157
 215 -0.013 -0.039 -0.152  0.113  0.010  0.045   0.1574420488
 226 -0.008 -0.039 -0.152  0.113  0.010  0.045   0.1574415627
 227 -0.010 -0.039 -0.152  0.113  0.010  0.045   0.1574413323
 236 -0.011 -0.040 -0.152  0.113  0.010  0.045   0.1574411857
 237 -0.011 -0.041 -0.152  0.113  0.010  0.045   0.1574410506
 251 -0.011 -0.041 -0.152  0.113  0.010  0.046   0.1574410163
 268 -0.011 -0.041 -0.152  0.113  0.009  0.046   0.1574409780
 282 -0.009 -0.043 -0.152  0.113  0.007  0.047   0.1574406570
 288 -0.010 -0.042 -0.152  0.113  0.008  0.047   0.1574406306
 294 -0.010 -0.042 -0.152  0.113  0.008  0.047   0.1574406169
 312 -0.009 -0.042 -0.152  0.113  0.008  0.047   0.1574406043
 341 -0.009 -0.042 -0.152  0.114  0.008  0.047   0.1574405976
 351 -0.009 -0.042 -0.152  0.114  0.009  0.047   0.1574404797
 352 -0.009 -0.042 -0.152  0.114  0.010  0.047   0.1574404247
 356 -0.008 -0.044 -0.152  0.114  0.009  0.048   0.1574402747
 360 -0.008 -0.043 -0.152  0.114  0.009  0.047   0.1574401378
 361 -0.008 -0.043 -0.152  0.114  0.009  0.047   0.1574401359
 367 -0.008 -0.043 -0.152  0.114  0.009  0.047   0.1574401258
 394 -0.008 -0.042 -0.152  0.114  0.009  0.047   0.1574399686
 415 -0.008 -0.042 -0.152  0.113  0.009  0.047   0.1574399435
 430 -0.007 -0.043 -0.152  0.113  0.008  0.048   0.1574399122
 435 -0.007 -0.043 -0.152  0.113  0.008  0.048   0.1574398981
 437 -0.007 -0.043 -0.152  0.113  0.008  0.048   0.1574398809
 475 -0.007 -0.043 -0.152  0.113  0.008  0.049   0.1574398589
 492 -0.007 -0.043 -0.152  0.113  0.009  0.049   0.1574398442
 513 -0.007 -0.043 -0.152  0.113  0.009  0.049   0.1574398301
 514 -0.007 -0.043 -0.153  0.113  0.009  0.049   0.1574397932
 569 -0.007 -0.043 -0.153  0.113  0.009  0.049   0.1574397637
 635 -0.007 -0.043 -0.153  0.113  0.009  0.049   0.1574397566
Powell done niters = 9
Computing relative cost
 0  -25.0 -25.0 -25.0   1.007105
 1  -25.0 -25.0  25.0   1.000977
 2  -25.0  25.0 -25.0   1.012423
 3  -25.0  25.0  25.0   1.019748
 4   25.0 -25.0 -25.0   1.024266
 5   25.0 -25.0  25.0   1.022357
 6   25.0  25.0 -25.0   1.018454
 7   25.0  25.0  25.0   1.018845
REL:  8  0.157440    8.124174  1.015522 rel = 0.155033 
Number of iterations     9
Min cost was 0.157440
Number of FunctionCalls   706
TolPowell 0.000000
nMaxItersPowell 36
OptimizationTime 96.378000 sec
Parameters at optimum (transmm) -0.00715 -0.04306 -0.15259
Parameters at optimum (rotdeg)  0.11330  0.00929  0.04876 
Final costs ----------------
Number of surface hits 306067
WM  Intensity    57.2881 +/-   8.2908
Ctx Intensity    69.4207 +/-   8.7837
Pct Contrast     19.2072 +/-  13.9822
Cost   0.1574
RelCost   0.1582
Reg at min cost was 
 0.999  -0.022  -0.035  -0.256;
 0.033  -0.096   0.995   0.495;
-0.026  -0.995  -0.096  -0.509;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat, type = 14 
Original Reg 
 0.999  -0.022  -0.034  -0.249;
 0.032  -0.098   0.995   0.538;
-0.026  -0.995  -0.098  -0.358;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
 0.000   0.000   0.001   0.008;
-0.001  -0.002  -0.000   0.043;
 0.000   0.000  -0.002   0.151;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 0.158104
Computing change in rh position
Surface RMS Diff (mm) 0.145179 0.292914
mri_segreg done
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.lta
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
---- Input registration matrix --------
 0.999  -0.022  -0.035  -0.256;
 0.033  -0.096   0.995   0.495;
-0.026  -0.995  -0.096  -0.509;
 0.000   0.000   0.000   1.000;
float2int = 0
---------------------------------------
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz
Tmov: --------------------
-0.700   0.000   0.000   95.881;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
---- Input registration matrix --------
 0.999  -0.022  -0.035  -0.256;
 0.033  -0.096   0.995   0.495;
-0.026  -0.995  -0.096  -0.509;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub002
RegMat ---------------------------
 0.999  -0.022  -0.035  -0.256;
 0.033  -0.096   0.995   0.495;
-0.026  -0.995  -0.096  -0.509;
 0.000   0.000   0.000   1.000;
transformed matrix:
 1.000  -0.001  -0.002   0.174;
 0.001   0.999   0.033   0.490;
 0.002  -0.033   0.999   0.098;
 0.000   0.000   0.000   1.000;
transformed matrix:
 0.699  -0.017  -0.022   39.493;
-0.025  -0.064  -0.663   271.504;
 0.016   0.663  -0.064   10.351;
 0.000   0.000   0.000   1.000;
Cleaning up
 
Started at Thu Aug 8 23:21:02 CEST 2013 
Ended   at Thu Aug  8 23:34:14 CEST 2013
BBR-Run-Time-Sec 792
 
bbregister Done
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --surf