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- Logfile for bbregister
- Thu Aug 8 23:21:02 CEST 2013
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- /opt/freesurfer/5.3.0/bin/bbregister --s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.lta --init-fsl --T2
- $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
- Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- FREESURFER_HOME /opt/freesurfer/5.3.0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.999032, 0.0218052, 0.0381938)
- j_ras = (0.0265301, 0.991428, 0.127932)
- k_ras = (0.0350768, -0.128822, 0.991047)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii...
- fslregister --s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister --dof 6 --fsvol brainmask.mgz
- Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fslregister.log
- Thu Aug 8 23:21:08 CEST 2013
- --s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister --dof 6 --fsvol brainmask.mgz
- $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
- snake5
- Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- nIters 1
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/brainmask.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 4.19095e-09, 0)
- j_ras = (0, 1.49012e-08, -1)
- k_ras = (0, 1, 0)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii...
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii --frame 0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii --frame 0
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.999032, 0.0218052, 0.0381938)
- j_ras = (0.0265301, 0.991428, 0.127932)
- k_ras = (0.0350768, -0.128822, 0.991047)
- keeping frame 0
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii...
- Mov determinant is -0.311049
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/reg0.19435.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat0 --s sub002 --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/reg0.19435.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.881;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 1, float2int = 0
- Computing reg from header (and possibly input matrix)
- ---- Input registration matrix (computed) --------
- 0.999 -0.022 -0.038 0.000;
- 0.035 -0.129 0.991 -0.000;
- -0.027 -0.991 -0.128 0.000;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.999 -0.022 -0.038 0.000;
- 0.035 -0.129 0.991 -0.000;
- -0.027 -0.991 -0.128 0.000;
- 0.000 0.000 0.000 1.000;
- Determinant 0.999999
- subject = sub002
- RegMat ---------------------------
- 0.999 -0.022 -0.038 0.000;
- 0.035 -0.129 0.991 -0.000;
- -0.027 -0.991 -0.128 0.000;
- 0.000 0.000 0.000 1.000;
- FSLOUTPUTTYPE NIFTI
- tkreg2FSL: mov det = -0.311049, ref det = -1
- Thu Aug 8 23:21:18 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat0
- Thu Aug 8 23:25:42 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
- tkregister2_cmdl --s sub002 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat.fsl.mat --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- ---- FSL registration matrix --------
- 0.999 -0.028 -0.022 38.022;
- -0.025 -0.094 -0.995 271.186;
- 0.025 0.995 -0.095 8.808;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.881;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- FSLOUTPUTTYPE NIFTI
- fsl2TkReg: mov det = -0.311049, ref det = -1
- ---- Input registration matrix (computed) --------
- 0.999 -0.025 -0.025 -0.620;
- 0.022 -0.095 0.995 1.194;
- -0.028 -0.995 -0.094 -1.620;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.999 -0.025 -0.025 -0.620;
- 0.022 -0.095 0.995 1.194;
- -0.028 -0.995 -0.094 -1.620;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub002
- RegMat ---------------------------
- 0.999 -0.025 -0.025 -0.620;
- 0.022 -0.095 0.995 1.194;
- -0.028 -0.995 -0.094 -1.620;
- 0.000 0.000 0.000 1.000;
-
- Started at Thu Aug 8 23:21:08 CEST 2013
- Ended at Thu Aug 8 23:31:41 CEST 2013
-
- fslregister Done
-
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --surf orig
-
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.init.dat
- subject sub002
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 100
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000100
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376450912
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.025 -0.025 -0.620;
- 0.022 -0.095 0.995 1.194;
- -0.028 -0.995 -0.094 -1.620;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.045212
- 1 -25.0 -25.0 25.0 1.003322
- 2 -25.0 25.0 -25.0 1.007902
- 3 -25.0 25.0 25.0 1.026935
- 4 25.0 -25.0 -25.0 1.013771
- 5 25.0 -25.0 25.0 1.061154
- 6 25.0 25.0 -25.0 1.023364
- 7 25.0 25.0 25.0 1.010720
- REL: 8 0.315800 8.192379 1.024047 rel = 0.308384
- Initial costs ----------------
- Number of surface hits 3047
- WM Intensity 57.8110 +/- 8.6409
- Ctx Intensity 70.0825 +/- 11.1034
- Pct Contrast 18.8163 +/- 18.7598
- Cost 0.3158
- RelCost 0.3084
- ------------------------------------
- Brute force preopt -4 4 4, n = 729
- 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9581 0.9581 0.0
- 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8927 0.8927 0.0
- 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8505 0.8505 0.0
- 39 -4.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.8266 0.8266 0.0
- 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7720 0.7720 0.0
- 301 0.0000 -4.0000 4.0000 -4.0000 0.0000 0.0000 0.7307 0.7307 0.0
- 346 0.0000 0.0000 -4.0000 4.0000 0.0000 0.0000 0.7154 0.7154 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3158 0.3158 0.0
- Brute Force --------------------------
- Min cost was 0.315800
- Number of iterations 729
- Search time 2.638000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 7 -0.038 0.000 0.000 0.000 0.000 0.000 0.3141953586
- 9 -0.089 0.000 0.000 0.000 0.000 0.000 0.3140502370
- 10 -0.067 0.000 0.000 0.000 0.000 0.000 0.3137921398
- 11 -0.066 0.000 0.000 0.000 0.000 0.000 0.3137911513
- 17 -0.066 -0.618 0.000 0.000 0.000 0.000 0.2756750169
- 19 -0.066 -0.587 0.000 0.000 0.000 0.000 0.2751719787
- 22 -0.066 -0.583 0.000 0.000 0.000 0.000 0.2751619203
- 26 -0.066 -0.583 1.000 0.000 0.000 0.000 0.1754425269
- 31 -0.066 -0.583 1.102 0.000 0.000 0.000 0.1711928032
- 33 -0.066 -0.583 1.196 0.000 0.000 0.000 0.1698448987
- 34 -0.066 -0.583 1.197 0.000 0.000 0.000 0.1698422257
- 35 -0.066 -0.583 1.207 0.000 0.000 0.000 0.1698337980
- 37 -0.066 -0.583 1.204 0.000 0.000 0.000 0.1698317278
- 38 -0.066 -0.583 1.203 0.000 0.000 0.000 0.1698315153
- 39 -0.066 -0.583 1.202 0.000 0.000 0.000 0.1698312767
- 41 -0.066 -0.583 1.201 0.000 0.000 0.000 0.1698309996
- 48 -0.066 -0.583 1.201 -0.143 0.000 0.000 0.1646940319
- 50 -0.066 -0.583 1.201 -0.125 0.000 0.000 0.1644750936
- 53 -0.066 -0.583 1.201 -0.112 0.000 0.000 0.1644734824
- 54 -0.066 -0.583 1.201 -0.118 0.000 0.000 0.1644524372
- 55 -0.066 -0.583 1.201 -0.119 0.000 0.000 0.1644516281
- 63 -0.066 -0.583 1.201 -0.119 -0.087 0.000 0.1642141626
- 67 -0.066 -0.583 1.201 -0.119 -0.116 0.000 0.1640114329
- 69 -0.066 -0.583 1.201 -0.119 -0.111 0.000 0.1639960182
- 77 -0.066 -0.583 1.201 -0.119 -0.111 0.382 0.1597704919
- 82 -0.066 -0.583 1.201 -0.119 -0.111 0.387 0.1597694456
- 83 -0.066 -0.583 1.201 -0.119 -0.111 0.385 0.1597666659
- 92 0.316 -0.583 1.201 -0.119 -0.111 0.385 0.1479585072
- 93 0.282 -0.583 1.201 -0.119 -0.111 0.385 0.1479536807
- 97 0.263 -0.583 1.201 -0.119 -0.111 0.385 0.1479532345
- 98 0.268 -0.583 1.201 -0.119 -0.111 0.385 0.1479499926
- 99 0.273 -0.583 1.201 -0.119 -0.111 0.385 0.1479497019
- 100 0.271 -0.583 1.201 -0.119 -0.111 0.385 0.1479482908
- 108 0.271 -0.651 1.201 -0.119 -0.111 0.385 0.1472668685
- 109 0.271 -0.655 1.201 -0.119 -0.111 0.385 0.1472428043
- 111 0.271 -0.692 1.201 -0.119 -0.111 0.385 0.1470721936
- 114 0.271 -0.690 1.201 -0.119 -0.111 0.385 0.1470695059
- 116 0.271 -0.689 1.201 -0.119 -0.111 0.385 0.1470688066
- 124 0.271 -0.689 1.205 -0.119 -0.111 0.385 0.1470313978
- 125 0.271 -0.689 1.242 -0.119 -0.111 0.385 0.1467459901
- 128 0.271 -0.689 1.236 -0.119 -0.111 0.385 0.1467363085
- 137 0.271 -0.689 1.236 -0.135 -0.111 0.385 0.1464510371
- 138 0.271 -0.689 1.236 -0.181 -0.111 0.385 0.1462013748
- 140 0.271 -0.689 1.236 -0.171 -0.111 0.385 0.1461816849
- 141 0.271 -0.689 1.236 -0.172 -0.111 0.385 0.1461805886
- 153 0.271 -0.689 1.236 -0.172 -0.115 0.385 0.1461751148
- 154 0.271 -0.689 1.236 -0.172 -0.116 0.385 0.1461750893
- 162 0.271 -0.689 1.236 -0.172 -0.116 0.481 0.1452244900
- 163 0.271 -0.689 1.236 -0.172 -0.116 0.475 0.1452053737
- 165 0.271 -0.689 1.236 -0.172 -0.116 0.474 0.1452050146
- 174 0.321 -0.689 1.236 -0.172 -0.116 0.474 0.1443831908
- 175 0.350 -0.689 1.236 -0.172 -0.116 0.474 0.1440496667
- 179 0.356 -0.689 1.236 -0.172 -0.116 0.474 0.1440469570
- 180 0.354 -0.689 1.236 -0.172 -0.116 0.474 0.1440446627
- 181 0.353 -0.689 1.236 -0.172 -0.116 0.474 0.1440445955
- 189 0.353 -0.657 1.236 -0.172 -0.116 0.474 0.1431075845
- 191 0.353 -0.637 1.236 -0.172 -0.116 0.474 0.1426990985
- 193 0.353 -0.635 1.236 -0.172 -0.116 0.474 0.1426940237
- 203 0.353 -0.635 1.294 -0.172 -0.116 0.474 0.1426287709
- 205 0.353 -0.635 1.267 -0.172 -0.116 0.474 0.1423279907
- 207 0.353 -0.635 1.270 -0.172 -0.116 0.474 0.1423240408
- 209 0.353 -0.635 1.269 -0.172 -0.116 0.474 0.1423230640
- 219 0.353 -0.635 1.269 -0.184 -0.116 0.474 0.1421965462
- 220 0.353 -0.635 1.269 -0.195 -0.116 0.474 0.1421919782
- 221 0.353 -0.635 1.269 -0.190 -0.116 0.474 0.1421769936
- 223 0.353 -0.635 1.269 -0.191 -0.116 0.474 0.1421761423
- 235 0.353 -0.635 1.269 -0.191 -0.120 0.474 0.1421721305
- 236 0.353 -0.635 1.269 -0.191 -0.118 0.474 0.1421696081
- 244 0.353 -0.635 1.269 -0.191 -0.118 0.532 0.1415484783
- 245 0.353 -0.635 1.269 -0.191 -0.118 0.542 0.1414569684
- 249 0.353 -0.635 1.269 -0.191 -0.118 0.548 0.1414469491
- 251 0.353 -0.635 1.269 -0.191 -0.118 0.550 0.1414460173
- 253 0.353 -0.635 1.269 -0.191 -0.118 0.549 0.1414459261
- 263 0.375 -0.635 1.269 -0.191 -0.118 0.549 0.1412665385
- 264 0.372 -0.635 1.269 -0.191 -0.118 0.549 0.1412527009
- 265 0.370 -0.635 1.269 -0.191 -0.118 0.549 0.1412521634
- 275 0.370 -0.646 1.269 -0.191 -0.118 0.549 0.1411436862
- 276 0.370 -0.648 1.269 -0.191 -0.118 0.549 0.1411432667
- 296 0.370 -0.648 1.269 -0.185 -0.118 0.549 0.1411159889
- 297 0.370 -0.648 1.269 -0.184 -0.118 0.549 0.1411140306
- 298 0.370 -0.648 1.269 -0.181 -0.118 0.549 0.1411132437
- 301 0.370 -0.648 1.269 -0.182 -0.118 0.549 0.1411126876
- 310 0.370 -0.648 1.269 -0.182 -0.122 0.549 0.1410933128
- 312 0.370 -0.648 1.269 -0.182 -0.124 0.549 0.1410913296
- 322 0.370 -0.648 1.269 -0.182 -0.124 0.566 0.1410126710
- 323 0.370 -0.648 1.269 -0.182 -0.124 0.564 0.1410103861
- 334 0.378 -0.648 1.269 -0.182 -0.124 0.564 0.1409838751
- 336 0.380 -0.648 1.269 -0.182 -0.124 0.564 0.1409838716
- 339 0.379 -0.648 1.269 -0.182 -0.124 0.564 0.1409830254
- 349 0.379 -0.646 1.269 -0.182 -0.124 0.564 0.1409792329
- 359 0.379 -0.646 1.266 -0.182 -0.124 0.564 0.1409789909
- 361 0.379 -0.646 1.267 -0.182 -0.124 0.564 0.1409778129
- 373 0.379 -0.646 1.267 -0.185 -0.124 0.564 0.1409715915
- 387 0.379 -0.646 1.267 -0.185 -0.125 0.564 0.1409707488
- 398 0.379 -0.646 1.267 -0.185 -0.125 0.570 0.1409646826
- 410 0.380 -0.646 1.267 -0.185 -0.125 0.570 0.1409638042
- 421 0.380 -0.645 1.267 -0.185 -0.125 0.570 0.1409606695
- 443 0.380 -0.645 1.267 -0.186 -0.125 0.570 0.1409603982
- 453 0.380 -0.645 1.267 -0.186 -0.124 0.570 0.1409583581
- 454 0.380 -0.645 1.267 -0.186 -0.123 0.570 0.1409575415
- 465 0.380 -0.645 1.267 -0.186 -0.123 0.571 0.1409573469
- Powell done niters = 5
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.995672
- 1 -25.0 -25.0 25.0 1.042601
- 2 -25.0 25.0 -25.0 1.011952
- 3 -25.0 25.0 25.0 1.001417
- 4 25.0 -25.0 -25.0 1.005375
- 5 25.0 -25.0 25.0 1.030164
- 6 25.0 25.0 -25.0 1.026341
- 7 25.0 25.0 25.0 1.008419
- REL: 8 0.140957 8.121942 1.015243 rel = 0.138841
- Number of iterations 5
- Min cost was 0.140957
- Number of FunctionCalls 467
- TolPowell 0.000100
- nMaxItersPowell 36
- OptimizationTime 1.789000 sec
- Parameters at optimum (transmm) 0.38005 -0.64469 1.26704
- Parameters at optimum (rotdeg) -0.18598 -0.12277 0.57063
- Final costs ----------------
- Number of surface hits 3047
- WM Intensity 56.9871 +/- 7.9749
- Ctx Intensity 69.4327 +/- 8.6816
- Pct Contrast 19.7210 +/- 13.7119
- Cost 0.1410
- RelCost 0.3084
- Reg at min cost was
- 0.999 -0.022 -0.034 -0.249;
- 0.032 -0.098 0.995 0.538;
- -0.026 -0.995 -0.098 -0.358;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat, type = 14
- Original Reg
- 0.999 -0.025 -0.025 -0.620;
- 0.022 -0.095 0.995 1.194;
- -0.028 -0.995 -0.094 -1.620;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 -0.003 0.010 -0.372;
- -0.010 0.003 0.001 0.656;
- -0.002 -0.000 0.003 -1.262;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 1.418080
- Computing change in rh position
- Surface RMS Diff (mm) 1.349605 1.734044
- mri_segreg done
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/tmp.bbregister.19392/bbr.pass1.dat
- subject sub002
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376706176
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.022 -0.034 -0.249;
- 0.032 -0.098 0.995 0.538;
- -0.026 -0.995 -0.098 -0.358;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.005681
- 1 -25.0 -25.0 25.0 1.001206
- 2 -25.0 25.0 -25.0 1.012760
- 3 -25.0 25.0 25.0 1.019027
- 4 25.0 -25.0 -25.0 1.023239
- 5 25.0 -25.0 25.0 1.021860
- 6 25.0 25.0 -25.0 1.018151
- 7 25.0 25.0 25.0 1.018750
- REL: 8 0.160538 8.120674 1.015084 rel = 0.158153
- Initial costs ----------------
- Number of surface hits 306067
- WM Intensity 57.2975 +/- 8.3244
- Ctx Intensity 69.4291 +/- 8.7579
- Pct Contrast 19.2108 +/- 14.0392
- Cost 0.1605
- RelCost 0.1582
- ------------------------------------
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1584 0.1584 0.0
- 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1579 0.1579 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.1559 0.1559 0.0
- 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.1548 0.1548 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1511 0.1511 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.1491 0.1491 0.0
- 19 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.0000 0.1464 0.1464 0.0
- 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.1457 0.1457 0.0
- 46 -0.1000 -0.1000 0.0000 0.1000 -0.1000 0.0000 0.1446 0.1446 0.0
- 49 -0.1000 -0.1000 0.0000 0.1000 0.0000 0.0000 0.1423 0.1423 0.0
- 293 0.0000 -0.1000 0.0000 0.1000 0.0000 0.1000 0.1422 0.1422 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1410 0.1410 0.0
- Brute Force --------------------------
- Min cost was 0.140957
- Number of iterations 729
- Search time 2.641000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 8 -0.025 0.000 0.000 0.000 0.000 0.000 0.1604698779
- 11 -0.026 0.000 0.000 0.000 0.000 0.000 0.1604692307
- 12 -0.027 0.000 0.000 0.000 0.000 0.000 0.1604690775
- 20 -0.027 -0.085 0.000 0.000 0.000 0.000 0.1599344056
- 21 -0.027 -0.069 0.000 0.000 0.000 0.000 0.1598841461
- 22 -0.027 -0.066 0.000 0.000 0.000 0.000 0.1598820851
- 23 -0.027 -0.065 0.000 0.000 0.000 0.000 0.1598819801
- 31 -0.027 -0.065 -0.050 0.000 0.000 0.000 0.1594113639
- 32 -0.027 -0.065 -0.083 0.000 0.000 0.000 0.1593761960
- 33 -0.027 -0.065 -0.072 0.000 0.000 0.000 0.1593607907
- 34 -0.027 -0.065 -0.071 0.000 0.000 0.000 0.1593605731
- 35 -0.027 -0.065 -0.070 0.000 0.000 0.000 0.1593605096
- 44 -0.027 -0.065 -0.070 0.096 0.000 0.000 0.1582018373
- 45 -0.027 -0.065 -0.070 0.083 0.000 0.000 0.1581597755
- 46 -0.027 -0.065 -0.070 0.081 0.000 0.000 0.1581593829
- 48 -0.027 -0.065 -0.070 0.082 0.000 0.000 0.1581592468
- 56 -0.027 -0.065 -0.070 0.082 0.009 0.000 0.1581555923
- 57 -0.027 -0.065 -0.070 0.082 0.007 0.000 0.1581551333
- 68 -0.027 -0.065 -0.070 0.082 0.007 0.031 0.1580046776
- 70 -0.027 -0.065 -0.070 0.082 0.007 0.039 0.1580007565
- 71 -0.027 -0.065 -0.070 0.082 0.007 0.037 0.1579999205
- 72 -0.027 -0.065 -0.070 0.082 0.007 0.036 0.1579999029
- 82 -0.016 -0.065 -0.070 0.082 0.007 0.036 0.1579976067
- 83 -0.020 -0.065 -0.070 0.082 0.007 0.036 0.1579957129
- 84 -0.021 -0.065 -0.070 0.082 0.007 0.036 0.1579953629
- 86 -0.022 -0.065 -0.070 0.082 0.007 0.036 0.1579952922
- 93 -0.022 -0.051 -0.070 0.082 0.007 0.036 0.1579751893
- 94 -0.022 -0.050 -0.070 0.082 0.007 0.036 0.1579748305
- 95 -0.022 -0.049 -0.070 0.082 0.007 0.036 0.1579745553
- 104 -0.022 -0.049 -0.112 0.082 0.007 0.036 0.1576380933
- 105 -0.022 -0.049 -0.139 0.082 0.007 0.036 0.1576224577
- 106 -0.022 -0.049 -0.129 0.082 0.007 0.036 0.1576082843
- 115 -0.022 -0.049 -0.129 0.127 0.007 0.036 0.1575930703
- 116 -0.022 -0.049 -0.129 0.105 0.007 0.036 0.1574967914
- 117 -0.022 -0.049 -0.129 0.104 0.007 0.036 0.1574965506
- 127 -0.022 -0.049 -0.129 0.104 0.008 0.036 0.1574965050
- 138 -0.022 -0.049 -0.129 0.104 0.008 0.038 0.1574956748
- 147 -0.020 -0.042 -0.151 0.113 0.008 0.039 0.1574506786
- 148 -0.020 -0.042 -0.152 0.113 0.008 0.039 0.1574505847
- 150 -0.020 -0.042 -0.152 0.113 0.008 0.039 0.1574505287
- 161 -0.011 -0.042 -0.152 0.113 0.008 0.039 0.1574457183
- 162 -0.012 -0.042 -0.152 0.113 0.008 0.039 0.1574455433
- 163 -0.013 -0.042 -0.152 0.113 0.008 0.039 0.1574454586
- 173 -0.013 -0.040 -0.152 0.113 0.008 0.039 0.1574453159
- 174 -0.013 -0.039 -0.152 0.113 0.008 0.039 0.1574453127
- 184 -0.013 -0.039 -0.152 0.113 0.008 0.047 0.1574429504
- 185 -0.013 -0.039 -0.152 0.113 0.008 0.045 0.1574422983
- 203 -0.013 -0.039 -0.152 0.113 0.009 0.045 0.1574421157
- 215 -0.013 -0.039 -0.152 0.113 0.010 0.045 0.1574420488
- 226 -0.008 -0.039 -0.152 0.113 0.010 0.045 0.1574415627
- 227 -0.010 -0.039 -0.152 0.113 0.010 0.045 0.1574413323
- 236 -0.011 -0.040 -0.152 0.113 0.010 0.045 0.1574411857
- 237 -0.011 -0.041 -0.152 0.113 0.010 0.045 0.1574410506
- 251 -0.011 -0.041 -0.152 0.113 0.010 0.046 0.1574410163
- 268 -0.011 -0.041 -0.152 0.113 0.009 0.046 0.1574409780
- 282 -0.009 -0.043 -0.152 0.113 0.007 0.047 0.1574406570
- 288 -0.010 -0.042 -0.152 0.113 0.008 0.047 0.1574406306
- 294 -0.010 -0.042 -0.152 0.113 0.008 0.047 0.1574406169
- 312 -0.009 -0.042 -0.152 0.113 0.008 0.047 0.1574406043
- 341 -0.009 -0.042 -0.152 0.114 0.008 0.047 0.1574405976
- 351 -0.009 -0.042 -0.152 0.114 0.009 0.047 0.1574404797
- 352 -0.009 -0.042 -0.152 0.114 0.010 0.047 0.1574404247
- 356 -0.008 -0.044 -0.152 0.114 0.009 0.048 0.1574402747
- 360 -0.008 -0.043 -0.152 0.114 0.009 0.047 0.1574401378
- 361 -0.008 -0.043 -0.152 0.114 0.009 0.047 0.1574401359
- 367 -0.008 -0.043 -0.152 0.114 0.009 0.047 0.1574401258
- 394 -0.008 -0.042 -0.152 0.114 0.009 0.047 0.1574399686
- 415 -0.008 -0.042 -0.152 0.113 0.009 0.047 0.1574399435
- 430 -0.007 -0.043 -0.152 0.113 0.008 0.048 0.1574399122
- 435 -0.007 -0.043 -0.152 0.113 0.008 0.048 0.1574398981
- 437 -0.007 -0.043 -0.152 0.113 0.008 0.048 0.1574398809
- 475 -0.007 -0.043 -0.152 0.113 0.008 0.049 0.1574398589
- 492 -0.007 -0.043 -0.152 0.113 0.009 0.049 0.1574398442
- 513 -0.007 -0.043 -0.152 0.113 0.009 0.049 0.1574398301
- 514 -0.007 -0.043 -0.153 0.113 0.009 0.049 0.1574397932
- 569 -0.007 -0.043 -0.153 0.113 0.009 0.049 0.1574397637
- 635 -0.007 -0.043 -0.153 0.113 0.009 0.049 0.1574397566
- Powell done niters = 9
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.007105
- 1 -25.0 -25.0 25.0 1.000977
- 2 -25.0 25.0 -25.0 1.012423
- 3 -25.0 25.0 25.0 1.019748
- 4 25.0 -25.0 -25.0 1.024266
- 5 25.0 -25.0 25.0 1.022357
- 6 25.0 25.0 -25.0 1.018454
- 7 25.0 25.0 25.0 1.018845
- REL: 8 0.157440 8.124174 1.015522 rel = 0.155033
- Number of iterations 9
- Min cost was 0.157440
- Number of FunctionCalls 706
- TolPowell 0.000000
- nMaxItersPowell 36
- OptimizationTime 96.378000 sec
- Parameters at optimum (transmm) -0.00715 -0.04306 -0.15259
- Parameters at optimum (rotdeg) 0.11330 0.00929 0.04876
- Final costs ----------------
- Number of surface hits 306067
- WM Intensity 57.2881 +/- 8.2908
- Ctx Intensity 69.4207 +/- 8.7837
- Pct Contrast 19.2072 +/- 13.9822
- Cost 0.1574
- RelCost 0.1582
- Reg at min cost was
- 0.999 -0.022 -0.035 -0.256;
- 0.033 -0.096 0.995 0.495;
- -0.026 -0.995 -0.096 -0.509;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat, type = 14
- Original Reg
- 0.999 -0.022 -0.034 -0.249;
- 0.032 -0.098 0.995 0.538;
- -0.026 -0.995 -0.098 -0.358;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 0.000 0.001 0.008;
- -0.001 -0.002 -0.000 0.043;
- 0.000 0.000 -0.002 0.151;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 0.158104
- Computing change in rh position
- Surface RMS Diff (mm) 0.145179 0.292914
- mri_segreg done
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.lta
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- ---- Input registration matrix --------
- 0.999 -0.022 -0.035 -0.256;
- 0.033 -0.096 0.995 0.495;
- -0.026 -0.995 -0.096 -0.509;
- 0.000 0.000 0.000 1.000;
- float2int = 0
- ---------------------------------------
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz
- Tmov: --------------------
- -0.700 0.000 0.000 95.881;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- ---- Input registration matrix --------
- 0.999 -0.022 -0.035 -0.256;
- 0.033 -0.096 0.995 0.495;
- -0.026 -0.995 -0.096 -0.509;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub002
- RegMat ---------------------------
- 0.999 -0.022 -0.035 -0.256;
- 0.033 -0.096 0.995 0.495;
- -0.026 -0.995 -0.096 -0.509;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 1.000 -0.001 -0.002 0.174;
- 0.001 0.999 0.033 0.490;
- 0.002 -0.033 0.999 0.098;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 0.699 -0.017 -0.022 39.493;
- -0.025 -0.064 -0.663 271.504;
- 0.016 0.663 -0.064 10.351;
- 0.000 0.000 0.000 1.000;
- Cleaning up
-
- Started at Thu Aug 8 23:21:02 CEST 2013
- Ended at Thu Aug 8 23:34:14 CEST 2013
- BBR-Run-Time-Sec 792
-
- bbregister Done
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/transforms/T2raw.dat --surf
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