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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub019
- # sysname Linux
- # hostname snake6
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub019
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1122823.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1106105.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1107855.638664, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 245375.320552, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 243100.776558, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 488476.097110, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 221964.859174, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 224381.682379, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 446346.541554, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 58460.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 635996.097110, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1006531.638664, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 994212.638664, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 991429.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1597342.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.008477, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.434672, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 9, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 17, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 26, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1113384.542379, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:18:23
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:16:03
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:16:03
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5479 5478.7 Left-Lateral-Ventricle 17.3050 13.4794 0.0000 102.0000 102.0000
- 2 5 212 212.5 Left-Inf-Lat-Vent 35.9545 13.0786 5.0000 80.0000 75.0000
- 3 7 12799 12799.2 Left-Cerebellum-White-Matter 85.5521 7.2266 16.0000 117.0000 101.0000
- 4 8 43785 43785.0 Left-Cerebellum-Cortex 54.6706 10.3592 3.0000 92.0000 89.0000
- 5 10 7300 7300.0 Left-Thalamus-Proper 81.0901 10.2459 36.0000 107.0000 71.0000
- 6 11 3191 3191.4 Left-Caudate 69.3928 9.5645 17.0000 102.0000 85.0000
- 7 12 6273 6273.2 Left-Putamen 76.2877 8.4296 34.0000 106.0000 72.0000
- 8 13 1518 1518.3 Left-Pallidum 93.8955 6.1432 62.0000 111.0000 49.0000
- 9 14 915 914.8 3rd-Ventricle 24.2669 14.6740 2.0000 71.0000 69.0000
- 10 15 2613 2612.5 4th-Ventricle 14.7358 10.5203 0.0000 74.0000 74.0000
- 11 16 19178 19178.0 Brain-Stem 83.7940 10.5165 0.0000 120.0000 120.0000
- 12 17 4281 4280.6 Left-Hippocampus 62.1068 9.2722 17.0000 105.0000 88.0000
- 13 18 1538 1538.2 Left-Amygdala 59.3086 8.3000 27.0000 88.0000 61.0000
- 14 24 1074 1074.4 CSF 27.3358 14.7681 0.0000 76.0000 76.0000
- 15 26 882 881.8 Left-Accumbens-area 63.9945 7.3029 36.0000 90.0000 54.0000
- 16 28 3635 3634.9 Left-VentralDC 92.3056 11.0962 37.0000 125.0000 88.0000
- 17 30 55 54.8 Left-vessel 57.8400 14.5327 26.0000 79.0000 53.0000
- 18 31 829 829.2 Left-choroid-plexus 51.4153 17.0046 8.0000 104.0000 96.0000
- 19 43 4513 4513.4 Right-Lateral-Ventricle 17.4033 13.1797 0.0000 83.0000 83.0000
- 20 44 204 203.8 Right-Inf-Lat-Vent 31.2054 12.8537 3.0000 70.0000 67.0000
- 21 46 13902 13902.1 Right-Cerebellum-White-Matter 85.2228 8.0735 7.0000 113.0000 106.0000
- 22 47 46731 46730.6 Right-Cerebellum-Cortex 53.1133 10.5340 0.0000 91.0000 91.0000
- 23 49 6824 6823.8 Right-Thalamus-Proper 78.6342 10.5431 18.0000 105.0000 87.0000
- 24 50 3326 3326.5 Right-Caudate 68.6906 10.3249 28.0000 101.0000 73.0000
- 25 51 5836 5835.9 Right-Putamen 77.3751 7.9646 39.0000 105.0000 66.0000
- 26 52 1631 1630.6 Right-Pallidum 98.0043 5.2677 73.0000 116.0000 43.0000
- 27 53 3925 3925.4 Right-Hippocampus 59.7688 9.9735 13.0000 103.0000 90.0000
- 28 54 1981 1981.1 Right-Amygdala 59.9462 8.7837 14.0000 89.0000 75.0000
- 29 58 718 717.9 Right-Accumbens-area 67.0760 7.9064 27.0000 96.0000 69.0000
- 30 60 3809 3809.1 Right-VentralDC 89.7267 12.1725 9.0000 122.0000 113.0000
- 31 62 54 54.0 Right-vessel 60.0370 12.1391 31.0000 88.0000 57.0000
- 32 63 1167 1167.0 Right-choroid-plexus 53.0000 15.9439 6.0000 97.0000 91.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 795 794.5 WM-hypointensities 77.6923 13.7671 11.0000 109.0000 98.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 9 8.6 non-WM-hypointensities 77.7500 13.3357 50.0000 95.0000 45.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 193 192.9 Optic-Chiasm 72.9692 21.4361 25.0000 118.0000 93.0000
- 41 251 746 746.1 CC_Posterior 107.3219 6.6718 79.0000 120.0000 41.0000
- 42 252 446 446.5 CC_Mid_Posterior 102.1413 11.8923 38.0000 121.0000 83.0000
- 43 253 443 443.0 CC_Central 99.0667 7.8206 40.0000 113.0000 73.0000
- 44 254 498 498.5 CC_Mid_Anterior 101.2708 5.8644 78.0000 113.0000 35.0000
- 45 255 793 792.8 CC_Anterior 102.7497 9.4392 27.0000 125.0000 98.0000
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