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aseg.stats

aseg.stats 9.4 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub019 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake6
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub019
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1122823.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1106105.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1107855.638664, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 245375.320552, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 243100.776558, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 488476.097110, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 221964.859174, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 224381.682379, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 446346.541554, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 58460.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 635996.097110, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1006531.638664, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 994212.638664, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 991429.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1597342.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.008477, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.434672, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 9, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 17, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 26, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1113384.542379, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2013/08/08 17:18:23 
    37. 

  37. # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/13 23:21:15 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2013/08/08 12:16:03 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2013/08/08 12:16:03 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4      5479     5478.7  Left-Lateral-Ventricle            17.3050    13.4794     0.0000   102.0000   102.0000 
    81. 

  81.   2   5       212      212.5  Left-Inf-Lat-Vent                 35.9545    13.0786     5.0000    80.0000    75.0000 
    82. 

  82.   3   7     12799    12799.2  Left-Cerebellum-White-Matter      85.5521     7.2266    16.0000   117.0000   101.0000 
    83. 

  83.   4   8     43785    43785.0  Left-Cerebellum-Cortex            54.6706    10.3592     3.0000    92.0000    89.0000 
    84. 

  84.   5  10      7300     7300.0  Left-Thalamus-Proper              81.0901    10.2459    36.0000   107.0000    71.0000 
    85. 

  85.   6  11      3191     3191.4  Left-Caudate                      69.3928     9.5645    17.0000   102.0000    85.0000 
    86. 

  86.   7  12      6273     6273.2  Left-Putamen                      76.2877     8.4296    34.0000   106.0000    72.0000 
    87. 

  87.   8  13      1518     1518.3  Left-Pallidum                     93.8955     6.1432    62.0000   111.0000    49.0000 
    88. 

  88.   9  14       915      914.8  3rd-Ventricle                     24.2669    14.6740     2.0000    71.0000    69.0000 
    89. 

  89.  10  15      2613     2612.5  4th-Ventricle                     14.7358    10.5203     0.0000    74.0000    74.0000 
    90. 

  90.  11  16     19178    19178.0  Brain-Stem                        83.7940    10.5165     0.0000   120.0000   120.0000 
    91. 

  91.  12  17      4281     4280.6  Left-Hippocampus                  62.1068     9.2722    17.0000   105.0000    88.0000 
    92. 

  92.  13  18      1538     1538.2  Left-Amygdala                     59.3086     8.3000    27.0000    88.0000    61.0000 
    93. 

  93.  14  24      1074     1074.4  CSF                               27.3358    14.7681     0.0000    76.0000    76.0000 
    94. 

  94.  15  26       882      881.8  Left-Accumbens-area               63.9945     7.3029    36.0000    90.0000    54.0000 
    95. 

  95.  16  28      3635     3634.9  Left-VentralDC                    92.3056    11.0962    37.0000   125.0000    88.0000 
    96. 

  96.  17  30        55       54.8  Left-vessel                       57.8400    14.5327    26.0000    79.0000    53.0000 
    97. 

  97.  18  31       829      829.2  Left-choroid-plexus               51.4153    17.0046     8.0000   104.0000    96.0000 
    98. 

  98.  19  43      4513     4513.4  Right-Lateral-Ventricle           17.4033    13.1797     0.0000    83.0000    83.0000 
    99. 

  99.  20  44       204      203.8  Right-Inf-Lat-Vent                31.2054    12.8537     3.0000    70.0000    67.0000 
    100. 

  100.  21  46     13902    13902.1  Right-Cerebellum-White-Matter     85.2228     8.0735     7.0000   113.0000   106.0000 
    101. 

  101.  22  47     46731    46730.6  Right-Cerebellum-Cortex           53.1133    10.5340     0.0000    91.0000    91.0000 
    102. 

  102.  23  49      6824     6823.8  Right-Thalamus-Proper             78.6342    10.5431    18.0000   105.0000    87.0000 
    103. 

  103.  24  50      3326     3326.5  Right-Caudate                     68.6906    10.3249    28.0000   101.0000    73.0000 
    104. 

  104.  25  51      5836     5835.9  Right-Putamen                     77.3751     7.9646    39.0000   105.0000    66.0000 
    105. 

  105.  26  52      1631     1630.6  Right-Pallidum                    98.0043     5.2677    73.0000   116.0000    43.0000 
    106. 

  106.  27  53      3925     3925.4  Right-Hippocampus                 59.7688     9.9735    13.0000   103.0000    90.0000 
    107. 

  107.  28  54      1981     1981.1  Right-Amygdala                    59.9462     8.7837    14.0000    89.0000    75.0000 
    108. 

  108.  29  58       718      717.9  Right-Accumbens-area              67.0760     7.9064    27.0000    96.0000    69.0000 
    109. 

  109.  30  60      3809     3809.1  Right-VentralDC                   89.7267    12.1725     9.0000   122.0000   113.0000 
    110. 

  110.  31  62        54       54.0  Right-vessel                      60.0370    12.1391    31.0000    88.0000    57.0000 
    111. 

  111.  32  63      1167     1167.0  Right-choroid-plexus              53.0000    15.9439     6.0000    97.0000    91.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77       795      794.5  WM-hypointensities                77.6923    13.7671    11.0000   109.0000    98.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80         9        8.6  non-WM-hypointensities            77.7500    13.3357    50.0000    95.0000    45.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       193      192.9  Optic-Chiasm                      72.9692    21.4361    25.0000   118.0000    93.0000 
    120. 

  120.  41 251       746      746.1  CC_Posterior                     107.3219     6.6718    79.0000   120.0000    41.0000 
    121. 

  121.  42 252       446      446.5  CC_Mid_Posterior                 102.1413    11.8923    38.0000   121.0000    83.0000 
    122. 

  122.  43 253       443      443.0  CC_Central                        99.0667     7.8206    40.0000   113.0000    73.0000 
    123. 

  123.  44 254       498      498.5  CC_Mid_Anterior                  101.2708     5.8644    78.0000   113.0000    35.0000 
    124. 

  124.  45 255       793      792.8  CC_Anterior                      102.7497     9.4392    27.0000   125.0000    98.0000 
    125.