cortical-surfaces-freesurfer/sub-12/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/bbr.pass1.dat
subject sub012
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376868895
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.999   0.035   0.016   0.050;
-0.013  -0.074   0.997   0.679;
 0.036  -0.997  -0.073  -0.368;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 282396
WM  Intensity0    55.9076 +/-   9.1613
Ctx Intensity0    71.6063 +/-   9.1786
Pct Contrast0     24.8724 +/-  14.9651
Cost   0.0932
RelCost   0.0927

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.0967   0.0967  0.0
     1  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000   0.0000      0.0953   0.0953  0.0
     4  -0.1000  -0.1000  -0.1000  -0.1000   0.0000   0.0000      0.0936   0.0936  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.0929   0.0929  0.0
    10  -0.1000  -0.1000  -0.1000   0.0000  -0.1000   0.0000      0.0926   0.0926  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.0892   0.0892  0.0
    22  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.0885   0.0885  0.0
    30  -0.1000  -0.1000   0.0000  -0.1000   0.0000  -0.1000      0.0873   0.0873  0.0
    31  -0.1000  -0.1000   0.0000  -0.1000   0.0000   0.0000      0.0868   0.0868  0.0
    34  -0.1000  -0.1000   0.0000  -0.1000   0.1000   0.0000      0.0866   0.0866  0.0
    39  -0.1000  -0.1000   0.0000   0.0000   0.0000  -0.1000      0.0849   0.0849  0.0
    40  -0.1000  -0.1000   0.0000   0.0000   0.0000   0.0000      0.0842   0.0842  0.0
    61  -0.1000  -0.1000   0.1000  -0.1000   0.1000   0.0000      0.0838   0.0838  0.0
   120  -0.1000   0.0000   0.0000   0.0000   0.0000  -0.1000      0.0820   0.0820  0.0
   121  -0.1000   0.0000   0.0000   0.0000   0.0000   0.0000      0.0816   0.0816  0.0
   124  -0.1000   0.0000   0.0000   0.0000   0.1000   0.0000      0.0815   0.0815  0.0
   301   0.0000  -0.1000   0.1000  -0.1000   0.0000   0.0000      0.0806   0.0806  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.0777   0.0777  0.0

Final costs ----------------
Number of surface hits 282396
WM  Intensity0    55.9136 +/-   9.1628
Ctx Intensity0    71.6165 +/-   9.1401
Pct Contrast0     24.8826 +/-  14.8895
Cost   0.0909
RelCost   0.0927
Number of iterations     4
Min cost was 0.090878
RelMinCost   0.0904
Number of FunctionCalls   329
OptimizationTime 56.980000 sec
Parameters at optimum (transmm, rotdeg)
 0.05062  0.02943  0.11032 -0.14210  0.01655  0.03097 
Number of surface hits 282396
WM  Intensity    55.9136 +/-   9.1628
Ctx Intensity    71.6165 +/-   9.1401
Pct Contrast     24.8826 +/-  14.8895
Cost at optimum   0.0909
RelCostOptimum   0.0904
nhits= 282396 wmmn=   55.9136 wmstd=  9.1628 constd=   14.8895 ctxmn=   71.6165 ctxstd=  9.1401 conmn =  24.8826 costmn =   0.0909 
#C#   0.051   0.029   0.110 -0.142  0.017  0.031 0.000000 0.000000 0.090878 55.913634 71.616514 24.882610 0.000000 0.500000     1 0
Reg at min cost was 
 0.999   0.034   0.015   0.101;
-0.013  -0.076   0.997   0.708;
 0.036  -0.996  -0.076  -0.259;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000   0.000   0.001  -0.050;
-0.001   0.002   0.000  -0.029;
 0.000  -0.000   0.002  -0.109;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.127629 0.280210