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- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/tmp.bbregister.19618/bbr.pass1.dat
- subject sub012
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub012/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376868895
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 0.035 0.016 0.050;
- -0.013 -0.074 0.997 0.679;
- 0.036 -0.997 -0.073 -0.368;
- 0.000 0.000 0.000 1.000;
- Initial costs ----------------
- Number of surface hits 282396
- WM Intensity0 55.9076 +/- 9.1613
- Ctx Intensity0 71.6063 +/- 9.1786
- Pct Contrast0 24.8724 +/- 14.9651
- Cost 0.0932
- RelCost 0.0927
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0967 0.0967 0.0
- 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0953 0.0953 0.0
- 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.0936 0.0936 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.0929 0.0929 0.0
- 10 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.0926 0.0926 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.0892 0.0892 0.0
- 22 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.0000 0.0885 0.0885 0.0
- 30 -0.1000 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.0873 0.0873 0.0
- 31 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.0868 0.0868 0.0
- 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.0866 0.0866 0.0
- 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.0849 0.0849 0.0
- 40 -0.1000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0842 0.0842 0.0
- 61 -0.1000 -0.1000 0.1000 -0.1000 0.1000 0.0000 0.0838 0.0838 0.0
- 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.0820 0.0820 0.0
- 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0816 0.0816 0.0
- 124 -0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.0815 0.0815 0.0
- 301 0.0000 -0.1000 0.1000 -0.1000 0.0000 0.0000 0.0806 0.0806 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0777 0.0777 0.0
- Final costs ----------------
- Number of surface hits 282396
- WM Intensity0 55.9136 +/- 9.1628
- Ctx Intensity0 71.6165 +/- 9.1401
- Pct Contrast0 24.8826 +/- 14.8895
- Cost 0.0909
- RelCost 0.0927
- Number of iterations 4
- Min cost was 0.090878
- RelMinCost 0.0904
- Number of FunctionCalls 329
- OptimizationTime 56.980000 sec
- Parameters at optimum (transmm, rotdeg)
- 0.05062 0.02943 0.11032 -0.14210 0.01655 0.03097
- Number of surface hits 282396
- WM Intensity 55.9136 +/- 9.1628
- Ctx Intensity 71.6165 +/- 9.1401
- Pct Contrast 24.8826 +/- 14.8895
- Cost at optimum 0.0909
- RelCostOptimum 0.0904
- nhits= 282396 wmmn= 55.9136 wmstd= 9.1628 constd= 14.8895 ctxmn= 71.6165 ctxstd= 9.1401 conmn = 24.8826 costmn = 0.0909
- #C# 0.051 0.029 0.110 -0.142 0.017 0.031 0.000000 0.000000 0.090878 55.913634 71.616514 24.882610 0.000000 0.500000 1 0
- Reg at min cost was
- 0.999 0.034 0.015 0.101;
- -0.013 -0.076 0.997 0.708;
- 0.036 -0.996 -0.076 -0.259;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 0.000 0.001 -0.050;
- -0.001 0.002 0.000 -0.029;
- 0.000 -0.000 0.002 -0.109;
- 0.000 0.000 0.000 0.000;
- Surface RMS Diff (mm) 0.127629 0.280210
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