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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub010
- # sysname Linux
- # hostname snake4
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub010
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 932519.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 913858.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 915337.530096, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 215045.046619, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 216453.318159, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 431498.364778, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 159951.796171, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 161933.369147, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 321885.165317, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 57131.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 568091.364778, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 827705.530096, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 811627.530096, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 809099.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1374696.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.007793, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.485663, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 25, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 18, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 43, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 925308.400873, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 16:55:43
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:06:32
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:06:32
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7829 7829.4 Left-Lateral-Ventricle 14.0442 12.9509 0.0000 82.0000 82.0000
- 2 5 339 339.4 Left-Inf-Lat-Vent 30.9058 15.6377 0.0000 75.0000 75.0000
- 3 7 12932 12931.6 Left-Cerebellum-White-Matter 85.7965 7.0168 15.0000 108.0000 93.0000
- 4 8 39955 39954.5 Left-Cerebellum-Cortex 56.0684 10.7904 4.0000 98.0000 94.0000
- 5 10 6620 6620.0 Left-Thalamus-Proper 81.7318 10.8451 31.0000 108.0000 77.0000
- 6 11 3656 3655.9 Left-Caudate 64.1597 9.6480 30.0000 109.0000 79.0000
- 7 12 6330 6329.8 Left-Putamen 73.3306 8.8297 34.0000 102.0000 68.0000
- 8 13 1725 1725.4 Left-Pallidum 88.7434 8.5236 50.0000 109.0000 59.0000
- 9 14 733 733.2 3rd-Ventricle 25.2369 16.4066 0.0000 79.0000 79.0000
- 10 15 1097 1097.1 4th-Ventricle 15.8166 12.0547 0.0000 74.0000 74.0000
- 11 16 19373 19373.5 Brain-Stem 81.0104 9.9463 12.0000 121.0000 109.0000
- 12 17 3640 3640.3 Left-Hippocampus 58.6731 9.9260 10.0000 100.0000 90.0000
- 13 18 1499 1498.7 Left-Amygdala 60.3109 7.8139 36.0000 86.0000 50.0000
- 14 24 897 897.2 CSF 26.9967 15.4486 2.0000 74.0000 72.0000
- 15 26 736 735.5 Left-Accumbens-area 58.2263 7.8392 35.0000 92.0000 57.0000
- 16 28 3573 3572.7 Left-VentralDC 91.9506 12.1355 27.0000 121.0000 94.0000
- 17 30 188 188.0 Left-vessel 54.7183 17.2144 3.0000 87.0000 84.0000
- 18 31 962 961.8 Left-choroid-plexus 47.6055 16.7761 9.0000 112.0000 103.0000
- 19 43 5416 5416.3 Right-Lateral-Ventricle 15.8622 13.0066 0.0000 81.0000 81.0000
- 20 44 307 307.4 Right-Inf-Lat-Vent 27.5449 14.7665 1.0000 72.0000 71.0000
- 21 46 13244 13243.8 Right-Cerebellum-White-Matter 85.4111 6.9673 13.0000 108.0000 95.0000
- 22 47 40491 40490.5 Right-Cerebellum-Cortex 55.7927 10.8867 0.0000 96.0000 96.0000
- 23 49 6326 6325.8 Right-Thalamus-Proper 79.2801 10.9703 34.0000 107.0000 73.0000
- 24 50 3626 3625.6 Right-Caudate 64.1794 9.8472 16.0000 105.0000 89.0000
- 25 51 6094 6093.9 Right-Putamen 74.8380 8.1986 36.0000 112.0000 76.0000
- 26 52 1871 1871.4 Right-Pallidum 89.4769 7.4011 46.0000 108.0000 62.0000
- 27 53 3529 3529.0 Right-Hippocampus 57.6955 10.3195 9.0000 104.0000 95.0000
- 28 54 1769 1769.4 Right-Amygdala 62.6702 7.5942 38.0000 90.0000 52.0000
- 29 58 758 757.7 Right-Accumbens-area 63.0520 7.4293 40.0000 93.0000 53.0000
- 30 60 3511 3511.2 Right-VentralDC 89.6263 12.8302 13.0000 120.0000 107.0000
- 31 62 124 124.5 Right-vessel 57.8345 18.1657 11.0000 108.0000 97.0000
- 32 63 1168 1167.7 Right-choroid-plexus 51.9858 15.3409 4.0000 104.0000 100.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 723 723.2 WM-hypointensities 76.4801 14.4680 12.0000 113.0000 101.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 61 60.6 non-WM-hypointensities 65.3590 8.1837 53.0000 85.0000 32.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 242 242.3 Optic-Chiasm 75.1847 22.3168 3.0000 119.0000 116.0000
- 41 251 850 850.3 CC_Posterior 107.6405 10.9372 26.0000 124.0000 98.0000
- 42 252 349 348.7 CC_Mid_Posterior 98.9554 15.7069 30.0000 124.0000 94.0000
- 43 253 307 307.0 CC_Central 101.5897 8.3738 69.0000 116.0000 47.0000
- 44 254 266 265.6 CC_Mid_Anterior 100.7454 5.7964 80.0000 112.0000 32.0000
- 45 255 615 614.9 CC_Anterior 102.2247 8.7490 41.0000 120.0000 79.0000
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