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aseg.stats

aseg.stats 9.4 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub010 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake4
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub010
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 932519.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 913858.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 915337.530096, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 215045.046619, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 216453.318159, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 431498.364778, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 159951.796171, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 161933.369147, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 321885.165317, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 57131.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 568091.364778, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 827705.530096, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 811627.530096, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 809099.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1374696.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.007793, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.485663, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 25, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 18, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 43, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 925308.400873, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2013/08/08 16:55:43 
    37. 

  37. # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/13 23:21:15 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2013/08/08 12:06:32 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2013/08/08 12:06:32 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4      7829     7829.4  Left-Lateral-Ventricle            14.0442    12.9509     0.0000    82.0000    82.0000 
    81. 

  81.   2   5       339      339.4  Left-Inf-Lat-Vent                 30.9058    15.6377     0.0000    75.0000    75.0000 
    82. 

  82.   3   7     12932    12931.6  Left-Cerebellum-White-Matter      85.7965     7.0168    15.0000   108.0000    93.0000 
    83. 

  83.   4   8     39955    39954.5  Left-Cerebellum-Cortex            56.0684    10.7904     4.0000    98.0000    94.0000 
    84. 

  84.   5  10      6620     6620.0  Left-Thalamus-Proper              81.7318    10.8451    31.0000   108.0000    77.0000 
    85. 

  85.   6  11      3656     3655.9  Left-Caudate                      64.1597     9.6480    30.0000   109.0000    79.0000 
    86. 

  86.   7  12      6330     6329.8  Left-Putamen                      73.3306     8.8297    34.0000   102.0000    68.0000 
    87. 

  87.   8  13      1725     1725.4  Left-Pallidum                     88.7434     8.5236    50.0000   109.0000    59.0000 
    88. 

  88.   9  14       733      733.2  3rd-Ventricle                     25.2369    16.4066     0.0000    79.0000    79.0000 
    89. 

  89.  10  15      1097     1097.1  4th-Ventricle                     15.8166    12.0547     0.0000    74.0000    74.0000 
    90. 

  90.  11  16     19373    19373.5  Brain-Stem                        81.0104     9.9463    12.0000   121.0000   109.0000 
    91. 

  91.  12  17      3640     3640.3  Left-Hippocampus                  58.6731     9.9260    10.0000   100.0000    90.0000 
    92. 

  92.  13  18      1499     1498.7  Left-Amygdala                     60.3109     7.8139    36.0000    86.0000    50.0000 
    93. 

  93.  14  24       897      897.2  CSF                               26.9967    15.4486     2.0000    74.0000    72.0000 
    94. 

  94.  15  26       736      735.5  Left-Accumbens-area               58.2263     7.8392    35.0000    92.0000    57.0000 
    95. 

  95.  16  28      3573     3572.7  Left-VentralDC                    91.9506    12.1355    27.0000   121.0000    94.0000 
    96. 

  96.  17  30       188      188.0  Left-vessel                       54.7183    17.2144     3.0000    87.0000    84.0000 
    97. 

  97.  18  31       962      961.8  Left-choroid-plexus               47.6055    16.7761     9.0000   112.0000   103.0000 
    98. 

  98.  19  43      5416     5416.3  Right-Lateral-Ventricle           15.8622    13.0066     0.0000    81.0000    81.0000 
    99. 

  99.  20  44       307      307.4  Right-Inf-Lat-Vent                27.5449    14.7665     1.0000    72.0000    71.0000 
    100. 

  100.  21  46     13244    13243.8  Right-Cerebellum-White-Matter     85.4111     6.9673    13.0000   108.0000    95.0000 
    101. 

  101.  22  47     40491    40490.5  Right-Cerebellum-Cortex           55.7927    10.8867     0.0000    96.0000    96.0000 
    102. 

  102.  23  49      6326     6325.8  Right-Thalamus-Proper             79.2801    10.9703    34.0000   107.0000    73.0000 
    103. 

  103.  24  50      3626     3625.6  Right-Caudate                     64.1794     9.8472    16.0000   105.0000    89.0000 
    104. 

  104.  25  51      6094     6093.9  Right-Putamen                     74.8380     8.1986    36.0000   112.0000    76.0000 
    105. 

  105.  26  52      1871     1871.4  Right-Pallidum                    89.4769     7.4011    46.0000   108.0000    62.0000 
    106. 

  106.  27  53      3529     3529.0  Right-Hippocampus                 57.6955    10.3195     9.0000   104.0000    95.0000 
    107. 

  107.  28  54      1769     1769.4  Right-Amygdala                    62.6702     7.5942    38.0000    90.0000    52.0000 
    108. 

  108.  29  58       758      757.7  Right-Accumbens-area              63.0520     7.4293    40.0000    93.0000    53.0000 
    109. 

  109.  30  60      3511     3511.2  Right-VentralDC                   89.6263    12.8302    13.0000   120.0000   107.0000 
    110. 

  110.  31  62       124      124.5  Right-vessel                      57.8345    18.1657    11.0000   108.0000    97.0000 
    111. 

  111.  32  63      1168     1167.7  Right-choroid-plexus              51.9858    15.3409     4.0000   104.0000   100.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77       723      723.2  WM-hypointensities                76.4801    14.4680    12.0000   113.0000   101.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80        61       60.6  non-WM-hypointensities            65.3590     8.1837    53.0000    85.0000    32.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       242      242.3  Optic-Chiasm                      75.1847    22.3168     3.0000   119.0000   116.0000 
    120. 

  120.  41 251       850      850.3  CC_Posterior                     107.6405    10.9372    26.0000   124.0000    98.0000 
    121. 

  121.  42 252       349      348.7  CC_Mid_Posterior                  98.9554    15.7069    30.0000   124.0000    94.0000 
    122. 

  122.  43 253       307      307.0  CC_Central                       101.5897     8.3738    69.0000   116.0000    47.0000 
    123. 

  123.  44 254       266      265.6  CC_Mid_Anterior                  100.7454     5.7964    80.0000   112.0000    32.0000 
    124. 

  124.  45 255       615      614.9  CC_Anterior                      102.2247     8.7490    41.0000   120.0000    79.0000 
    125.