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cortical-surfaces-freesurfer
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recon-all.env

recon-all.env 3.5 KB
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  1. Thu Aug  8 10:54:16 CEST 2013
    2. 

  2. FREESURFER_HOME /opt/freesurfer/5.3.0
    3. 

  3. Actual FREESURFER_HOME /opt/freesurfer/5.3.0
    4. 

  4. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub010
    5. 

  5. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    6. 

  6. -i /home/data/exppsy/forrest_gump/openfmri.org/sub010/anatomy/highres001.nii.gz -cw256 -all -T2 /home/data/exppsy/forrest_gump/openfmri.org/sub010/anatomy/other/t2w001.nii.gz -T2pial -subjid sub010 -sd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    7. 

  7. Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
    8. 

  8. 

  9. cputime      unlimited
    10. 

  10. filesize     unlimited
    11. 

  11. datasize     unlimited
    12. 

  12. stacksize    unlimited
    13. 

  13. coredumpsize 0 kbytes
    14. 

  14. memoryuse    unlimited
    15. 

  15. vmemoryuse   unlimited
    16. 

  16. descriptors  1024 
    17. 

  17. memorylocked 64 kbytes
    18. 

  18. maxproc      unlimited
    19. 

  19. maxlocks     unlimited
    20. 

  20. maxsignal    16382 
    21. 

  21. maxmessage   819200 
    22. 

  22. maxnice      0 
    23. 

  23. maxrtprio    0 
    24. 

  24. maxrttime    unlimited
    25. 

  25. 

  26. POSSUMDIR=/usr/share/fsl/5.0
    27. 

  27. LANGUAGE=en_US:en
    28. 

  28. USER=fkaule
    29. 

  29. SSH_CLIENT=141.44.98.28 55777 22
    30. 

  30. MAIL=/var/mail/fkaule
    31. 

  31. MSM_PRODUCT=MSM
    32. 

  32. LD_LIBRARY_PATH=/usr/lib/fsl/5.0
    33. 

  33. SHLVL=2
    34. 

  34. OLDPWD=/home
    35. 

  35. CONDOR_ID=40988.0
    36. 

  36. _CONDOR_MACHINE_AD=/var/lib/condor/execute/dir_14300/.machine.ad
    37. 

  37. HOME=/home/fkaule
    38. 

  38. SSH_TTY=/dev/pts/10
    39. 

  39. XDG_SESSION_COOKIE=fce1b605eb98d6b0f3e0b7ad000005bf-1375944552.163769-1862872819
    40. 

  40. MINC_LIB_DIR=/opt/freesurfer/5.3.0/mni/lib
    41. 

  41. FREESURFER_HOME=/opt/freesurfer/5.3.0
    42. 

  42. MINC_BIN_DIR=/opt/freesurfer/5.3.0/mni/bin
    43. 

  43. _CONDOR_JOB_PIDS=
    44. 

  44. FSLDIR=/usr/share/fsl/5.0
    45. 

  45. CONDOR_PARENT_ID=medusa:19365:1375951932
    46. 

  46. FUNCTIONALS_DIR=/opt/freesurfer/5.3.0/sessions
    47. 

  47. TMPDIR=/var/lib/condor/execute/dir_14300
    48. 

  48. _CONDOR_JOB_IWD=/home/data/exppsy/forrest_gump
    49. 

  49. LOGNAME=fkaule
    50. 

  50. FSLMULTIFILEQUIT=TRUE
    51. 

  51. FSLTCLSH=/usr/bin/tclsh
    52. 

  52. TEMP=/var/lib/condor/execute/dir_14300
    53. 

  53. _=/usr/bin/ipython
    54. 

  54. FSFAST_HOME=/opt/freesurfer/5.3.0/fsfast
    55. 

  55. TERM=xterm
    56. 

  56. FSLMACHINELIST=
    57. 

  57. _JAVA_OPTIONS=-Xmx256m
    58. 

  58. PATH=/opt/freesurfer/5.3.0/bin:/opt/freesurfer/5.3.0/fsfast/bin:/opt/freesurfer/5.3.0/tktools:/opt/freesurfer/5.3.0/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/5.0
    59. 

  59. OS=Linux
    60. 

  60. _CONDOR_DAGMAN_LOG=/home/data/exppsy/forrest_gump/pipe_tmp/metaflow_fs/batch/workflow-f6ef0e4c-d7a4-4a37-a0a9-c223ed5b1f93.dag.dagman.out
    61. 

  61. PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    62. 

  62. FSLOUTPUTTYPE=NIFTI_GZ
    63. 

  63. DISPLAY=:1
    64. 

  64. MNI_DIR=/opt/freesurfer/5.3.0/mni
    65. 

  65. MNI_PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    66. 

  66. LANG=C
    67. 

  67. LOCAL_DIR=/opt/freesurfer/5.3.0/local
    68. 

  68. FSLBROWSER=/etc/alternatives/x-www-browser
    69. 

  69. TMP=/var/lib/condor/execute/dir_14300
    70. 

  70. FS_OVERRIDE=0
    71. 

  71. SSH_AUTH_SOCK=/tmp/ssh-YmVJB30651/agent.30651
    72. 

  72. FSLWISH=/usr/bin/wish
    73. 

  73. FSLREMOTECALL=
    74. 

  74. _CONDOR_ANCESTOR_2640=14300:1375952055:1902678283
    75. 

  75. SHELL=/bin/bash
    76. 

  76. _CONDOR_ANCESTOR_7302=7421:1360325385:4217277112
    77. 

  77. _CONDOR_SLOT=slot1_4
    78. 

  78. MSM_HOME=/usr/local/MegaRAID Storage Manager
    79. 

  79. _CONDOR_ANCESTOR_7421=19365:1375951932:2149059971
    80. 

  80. FMRI_ANALYSIS_DIR=/opt/freesurfer/5.3.0/fsfast
    81. 

  81. FSF_OUTPUT_FORMAT=nii.gz
    82. 

  82. MNI_DATAPATH=/opt/freesurfer/5.3.0/mni/data
    83. 

  83. _CONDOR_ANCESTOR_14300=14301:1375952055:3513067710
    84. 

  84. PWD=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub010
    85. 

  85. SSH_CONNECTION=141.44.98.28 55777 141.44.17.54 22
    86. 

  86. SUBJECTS_DIR=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    87. 

  87. _CONDOR_MAX_DAGMAN_LOG=0
    88. 

  88. _CONDOR_ANCESTOR_2639=2640:1372249771:4057910684
    89. 

  89. _CONDOR_JOB_AD=/var/lib/condor/execute/dir_14300/.job.ad
    90. 

  90. FSLLOCKDIR=
    91. 

  91. _CONDOR_SCRATCH_DIR=/var/lib/condor/execute/dir_14300
    92. 

  92. FIX_VERTEX_AREA=
    93. 

  93. NLSPATH=/usr/share/locale/%L/LC_MESSAGES/%N.cat
    94. 

  94. HOSTTYPE=x86_64-linux
    95. 

  95. VENDOR=unknown
    96. 

  96. OSTYPE=linux
    97. 

  97. MACHTYPE=x86_64
    98. 

  98. GROUP=fkaule
    99. 

  99. HOST=snake4
    100. 

  100. REMOTEHOST=
    101. 

  101. OMP_NUM_THREADS=1
    102. 

  102. REQUIRE_FS_MATCH=0
    103.