recon-all.env 3.5 KB

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  1. Thu Aug 8 10:54:16 CEST 2013
  2. FREESURFER_HOME /opt/freesurfer/5.3.0
  3. Actual FREESURFER_HOME /opt/freesurfer/5.3.0
  4. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub010
  5. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  6. -i /home/data/exppsy/forrest_gump/openfmri.org/sub010/anatomy/highres001.nii.gz -cw256 -all -T2 /home/data/exppsy/forrest_gump/openfmri.org/sub010/anatomy/other/t2w001.nii.gz -T2pial -subjid sub010 -sd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  7. Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
  8. cputime unlimited
  9. filesize unlimited
  10. datasize unlimited
  11. stacksize unlimited
  12. coredumpsize 0 kbytes
  13. memoryuse unlimited
  14. vmemoryuse unlimited
  15. descriptors 1024
  16. memorylocked 64 kbytes
  17. maxproc unlimited
  18. maxlocks unlimited
  19. maxsignal 16382
  20. maxmessage 819200
  21. maxnice 0
  22. maxrtprio 0
  23. maxrttime unlimited
  24. POSSUMDIR=/usr/share/fsl/5.0
  25. LANGUAGE=en_US:en
  26. USER=fkaule
  27. SSH_CLIENT=141.44.98.28 55777 22
  28. MAIL=/var/mail/fkaule
  29. MSM_PRODUCT=MSM
  30. LD_LIBRARY_PATH=/usr/lib/fsl/5.0
  31. SHLVL=2
  32. OLDPWD=/home
  33. CONDOR_ID=40988.0
  34. _CONDOR_MACHINE_AD=/var/lib/condor/execute/dir_14300/.machine.ad
  35. HOME=/home/fkaule
  36. SSH_TTY=/dev/pts/10
  37. XDG_SESSION_COOKIE=fce1b605eb98d6b0f3e0b7ad000005bf-1375944552.163769-1862872819
  38. MINC_LIB_DIR=/opt/freesurfer/5.3.0/mni/lib
  39. FREESURFER_HOME=/opt/freesurfer/5.3.0
  40. MINC_BIN_DIR=/opt/freesurfer/5.3.0/mni/bin
  41. _CONDOR_JOB_PIDS=
  42. FSLDIR=/usr/share/fsl/5.0
  43. CONDOR_PARENT_ID=medusa:19365:1375951932
  44. FUNCTIONALS_DIR=/opt/freesurfer/5.3.0/sessions
  45. TMPDIR=/var/lib/condor/execute/dir_14300
  46. _CONDOR_JOB_IWD=/home/data/exppsy/forrest_gump
  47. LOGNAME=fkaule
  48. FSLMULTIFILEQUIT=TRUE
  49. FSLTCLSH=/usr/bin/tclsh
  50. TEMP=/var/lib/condor/execute/dir_14300
  51. _=/usr/bin/ipython
  52. FSFAST_HOME=/opt/freesurfer/5.3.0/fsfast
  53. TERM=xterm
  54. FSLMACHINELIST=
  55. _JAVA_OPTIONS=-Xmx256m
  56. PATH=/opt/freesurfer/5.3.0/bin:/opt/freesurfer/5.3.0/fsfast/bin:/opt/freesurfer/5.3.0/tktools:/opt/freesurfer/5.3.0/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/5.0
  57. OS=Linux
  58. _CONDOR_DAGMAN_LOG=/home/data/exppsy/forrest_gump/pipe_tmp/metaflow_fs/batch/workflow-f6ef0e4c-d7a4-4a37-a0a9-c223ed5b1f93.dag.dagman.out
  59. PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
  60. FSLOUTPUTTYPE=NIFTI_GZ
  61. DISPLAY=:1
  62. MNI_DIR=/opt/freesurfer/5.3.0/mni
  63. MNI_PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
  64. LANG=C
  65. LOCAL_DIR=/opt/freesurfer/5.3.0/local
  66. FSLBROWSER=/etc/alternatives/x-www-browser
  67. TMP=/var/lib/condor/execute/dir_14300
  68. FS_OVERRIDE=0
  69. SSH_AUTH_SOCK=/tmp/ssh-YmVJB30651/agent.30651
  70. FSLWISH=/usr/bin/wish
  71. FSLREMOTECALL=
  72. _CONDOR_ANCESTOR_2640=14300:1375952055:1902678283
  73. SHELL=/bin/bash
  74. _CONDOR_ANCESTOR_7302=7421:1360325385:4217277112
  75. _CONDOR_SLOT=slot1_4
  76. MSM_HOME=/usr/local/MegaRAID Storage Manager
  77. _CONDOR_ANCESTOR_7421=19365:1375951932:2149059971
  78. FMRI_ANALYSIS_DIR=/opt/freesurfer/5.3.0/fsfast
  79. FSF_OUTPUT_FORMAT=nii.gz
  80. MNI_DATAPATH=/opt/freesurfer/5.3.0/mni/data
  81. _CONDOR_ANCESTOR_14300=14301:1375952055:3513067710
  82. PWD=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub010
  83. SSH_CONNECTION=141.44.98.28 55777 141.44.17.54 22
  84. SUBJECTS_DIR=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  85. _CONDOR_MAX_DAGMAN_LOG=0
  86. _CONDOR_ANCESTOR_2639=2640:1372249771:4057910684
  87. _CONDOR_JOB_AD=/var/lib/condor/execute/dir_14300/.job.ad
  88. FSLLOCKDIR=
  89. _CONDOR_SCRATCH_DIR=/var/lib/condor/execute/dir_14300
  90. FIX_VERTEX_AREA=
  91. NLSPATH=/usr/share/locale/%L/LC_MESSAGES/%N.cat
  92. HOSTTYPE=x86_64-linux
  93. VENDOR=unknown
  94. OSTYPE=linux
  95. MACHTYPE=x86_64
  96. GROUP=fkaule
  97. HOST=snake4
  98. REMOTEHOST=
  99. OMP_NUM_THREADS=1
  100. REQUIRE_FS_MATCH=0