raw/ -> src/

.gitmodules

@@ -1,6 +1,6 @@
 [submodule "raw/phase2"]
-	path = raw/phase2
+	path = src/phase2
 	url = ../phase2
 [submodule "raw/tnt"]
-	path = raw/tnt
+	path = src/tnt
 	url = ../tnt

code/avmovie_motion_correction.submit

@@ -10,243 +10,243 @@ should_transfer_files = NO
 transfer_executable = False
 executable = /home/data/psyinf/forrest_gump/collection/aligned/code/mcflirt_2stage
 
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-8_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-1_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-1_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-2_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-2_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-3_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-3_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-4_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-4_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-5_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-5_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-5_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-6_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-6_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-6_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-7_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-7_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-7_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-8_bold.nii.gz
+arguments = src/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-8_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-8_bold.nii.gz
 queue

code/mk_movie_ds.py

@@ -46,7 +46,7 @@ def movie_dataset(subj, task, label, **kwargs):
     #       2,
     #       'avmovie',
     #       'bold3Tp2',
-    #       mask='raw/tnt/sub-02/bold3Tp2/brain_mask.nii.gz')
+    #       mask='src/tnt/sub-02/bold3Tp2/brain_mask.nii.gz')
     cur_max_time = 0
     segments = []
     if not 'add_sa' in kwargs:

code/movieloc_motion_correction.submit

@@ -10,33 +10,33 @@ should_transfer_files = NO
 transfer_executable = False
 executable = /home/data/psyinf/forrest_gump/collection/aligned/code/mcflirt_2stage
 
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-movielocalizer_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold.nii.gz
 queue

code/retmap_motion_correction.submit

@@ -10,123 +10,123 @@ should_transfer_files = NO
 transfer_executable = False
 executable = /home/data/psyinf/forrest_gump/collection/aligned/code/mcflirt_2stage
 
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-retmap_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-1_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-1_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-1_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-2_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-2_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-2_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-3_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-3_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-3_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-4_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-4_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-retmap_run-4_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-retmap_run-4_bold.nii.gz
 queue

code/visloc_motion_correction.submit

@@ -10,123 +10,123 @@ should_transfer_files = NO
 transfer_executable = False
 executable = /home/data/psyinf/forrest_gump/collection/aligned/code/mcflirt_2stage
 
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-2_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-2_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-3_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-3_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-objectcategories_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-2_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-2_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-3_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-3_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-objectcategories_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-2_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-2_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-3_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-3_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-objectcategories_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-objectcategories_run-2_bold.nii.gz
+arguments = src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-objectcategories_run-2_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-objectcategories_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-objectcategories_run-3_bold.nii.gz
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
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 queue
-arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-objectcategories_run-2_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-objectcategories_run-3_bold.nii.gz
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 queue
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+arguments = src/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-objectcategories_run-4_bold.nii.gz
 queue
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 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-objectcategories_run-2_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-objectcategories_run-3_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-objectcategories_run-4_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-objectcategories_run-1_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-objectcategories_run-2_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-objectcategories_run-3_bold.nii.gz
+arguments = src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-objectcategories_run-3_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-objectcategories_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-objectcategories_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-objectcategories_run-2_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-objectcategories_run-3_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-objectcategories_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-2_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-2_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-3_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-3_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-objectcategories_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-objectcategories_run-2_bold.nii.gz
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 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-objectcategories_run-3_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-objectcategories_run-3_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-objectcategories_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-objectcategories_run-4_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-1_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-1_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-1_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-1_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-2_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-2_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-2_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-2_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-3_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-3_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-3_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-3_bold.nii.gz
 queue
-arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-4_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-4_bold.nii.gz
+arguments = src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-objectcategories_run-4_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-objectcategories_run-4_bold.nii.gz
 queue