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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051370
- # sysname Linux
- # hostname tars-578
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051370
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1364864.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1347683.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1348121.647615, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 14710.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 301645.464150, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 294760.905700, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 596406.369850, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 269685.053190, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 262013.224576, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 531698.277766, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64565.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 781548.369850, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1210909.647615, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1196199.647615, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1192126.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1826518.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.813513, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.088676, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 42, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 58, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 100, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1677741.752475, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 04:20:38
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 17:35:05
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 17:35:05
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7778 8045.5 Left-Lateral-Ventricle 25.6239 14.1289 0.0000 84.0000 84.0000
- 2 5 296 300.5 Left-Inf-Lat-Vent 30.7500 14.4285 3.0000 70.0000 67.0000
- 3 7 16839 17156.8 Left-Cerebellum-White-Matter 82.7131 8.6029 18.0000 114.0000 96.0000
- 4 8 59579 59840.2 Left-Cerebellum-Cortex 59.5377 11.8256 4.0000 105.0000 101.0000
- 5 10 8644 8468.1 Left-Thalamus-Proper 85.3373 10.6965 22.0000 116.0000 94.0000
- 6 11 4423 4382.3 Left-Caudate 74.2107 8.4251 40.0000 112.0000 72.0000
- 7 12 5698 5632.9 Left-Putamen 80.3238 8.1461 35.0000 112.0000 77.0000
- 8 13 1927 1889.0 Left-Pallidum 94.7187 7.4235 39.0000 116.0000 77.0000
- 9 14 593 647.9 3rd-Ventricle 44.2546 14.8504 4.0000 77.0000 73.0000
- 10 15 1216 1329.8 4th-Ventricle 28.7007 13.0237 2.0000 72.0000 70.0000
- 11 16 24448 24431.8 Brain-Stem 78.9039 9.8465 4.0000 115.0000 111.0000
- 12 17 4421 4313.3 Left-Hippocampus 63.9869 10.3552 11.0000 115.0000 104.0000
- 13 18 1726 1662.2 Left-Amygdala 64.4073 7.6397 29.0000 88.0000 59.0000
- 14 24 662 672.7 CSF 45.9940 14.1686 4.0000 79.0000 75.0000
- 15 26 719 712.8 Left-Accumbens-area 69.7107 6.7364 46.0000 92.0000 46.0000
- 16 28 4453 4296.4 Left-VentralDC 86.6849 11.9444 16.0000 122.0000 106.0000
- 17 30 16 27.7 Left-vessel 51.1250 11.2302 31.0000 72.0000 41.0000
- 18 31 586 514.7 Left-choroid-plexus 54.8396 15.3277 16.0000 95.0000 79.0000
- 19 43 5227 5387.5 Right-Lateral-Ventricle 28.3956 14.8943 0.0000 81.0000 81.0000
- 20 44 237 265.7 Right-Inf-Lat-Vent 40.8692 15.8816 6.0000 92.0000 86.0000
- 21 46 18002 18078.0 Right-Cerebellum-White-Matter 75.4461 7.7057 36.0000 106.0000 70.0000
- 22 47 59190 59461.3 Right-Cerebellum-Cortex 54.6449 10.5847 3.0000 98.0000 95.0000
- 23 49 8528 8357.1 Right-Thalamus-Proper 82.8668 9.5409 16.0000 112.0000 96.0000
- 24 50 4497 4472.0 Right-Caudate 72.9691 8.6970 37.0000 107.0000 70.0000
- 25 51 5506 5477.4 Right-Putamen 77.3108 8.0660 31.0000 99.0000 68.0000
- 26 52 2053 1989.6 Right-Pallidum 91.8821 7.0858 60.0000 114.0000 54.0000
- 27 53 4669 4492.8 Right-Hippocampus 62.3791 9.6727 6.0000 97.0000 91.0000
- 28 54 2026 1909.2 Right-Amygdala 60.5888 7.9658 20.0000 87.0000 67.0000
- 29 58 734 718.2 Right-Accumbens-area 68.5858 7.0651 40.0000 94.0000 54.0000
- 30 60 4588 4398.3 Right-VentralDC 84.8160 11.2960 30.0000 118.0000 88.0000
- 31 62 18 23.7 Right-vessel 53.5000 10.3199 29.0000 67.0000 38.0000
- 32 63 622 555.2 Right-choroid-plexus 52.5402 13.2050 19.0000 86.0000 67.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1085 1025.8 WM-hypointensities 68.7088 14.2457 4.0000 97.0000 93.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 173 176.8 Optic-Chiasm 79.0000 17.6599 22.0000 111.0000 89.0000
- 41 251 1051 986.1 CC_Posterior 98.3787 15.4817 19.0000 123.0000 104.0000
- 42 252 684 614.6 CC_Mid_Posterior 91.6623 18.2857 6.0000 124.0000 118.0000
- 43 253 560 526.9 CC_Central 97.1054 13.7061 41.0000 121.0000 80.0000
- 44 254 702 634.8 CC_Mid_Anterior 95.0256 17.2122 17.0000 122.0000 105.0000
- 45 255 933 896.5 CC_Anterior 102.3258 17.3846 6.0000 159.0000 153.0000
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