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ABIDE_fs-6.0.0
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0051370
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051370 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-578
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051370
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1364864.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1347683.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1348121.647615, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 14710.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 301645.464150, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 294760.905700, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 596406.369850, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 269685.053190, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 262013.224576, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 531698.277766, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64565.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 781548.369850, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1210909.647615, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1196199.647615, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1192126.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1826518.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.813513, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.088676, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 42, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 58, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 100, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1677741.752475, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 04:20:38 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 17:35:05 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 17:35:05 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      7778     8045.5  Left-Lateral-Ventricle            25.6239    14.1289     0.0000    84.0000    84.0000 
    82. 

  82.   2   5       296      300.5  Left-Inf-Lat-Vent                 30.7500    14.4285     3.0000    70.0000    67.0000 
    83. 

  83.   3   7     16839    17156.8  Left-Cerebellum-White-Matter      82.7131     8.6029    18.0000   114.0000    96.0000 
    84. 

  84.   4   8     59579    59840.2  Left-Cerebellum-Cortex            59.5377    11.8256     4.0000   105.0000   101.0000 
    85. 

  85.   5  10      8644     8468.1  Left-Thalamus-Proper              85.3373    10.6965    22.0000   116.0000    94.0000 
    86. 

  86.   6  11      4423     4382.3  Left-Caudate                      74.2107     8.4251    40.0000   112.0000    72.0000 
    87. 

  87.   7  12      5698     5632.9  Left-Putamen                      80.3238     8.1461    35.0000   112.0000    77.0000 
    88. 

  88.   8  13      1927     1889.0  Left-Pallidum                     94.7187     7.4235    39.0000   116.0000    77.0000 
    89. 

  89.   9  14       593      647.9  3rd-Ventricle                     44.2546    14.8504     4.0000    77.0000    73.0000 
    90. 

  90.  10  15      1216     1329.8  4th-Ventricle                     28.7007    13.0237     2.0000    72.0000    70.0000 
    91. 

  91.  11  16     24448    24431.8  Brain-Stem                        78.9039     9.8465     4.0000   115.0000   111.0000 
    92. 

  92.  12  17      4421     4313.3  Left-Hippocampus                  63.9869    10.3552    11.0000   115.0000   104.0000 
    93. 

  93.  13  18      1726     1662.2  Left-Amygdala                     64.4073     7.6397    29.0000    88.0000    59.0000 
    94. 

  94.  14  24       662      672.7  CSF                               45.9940    14.1686     4.0000    79.0000    75.0000 
    95. 

  95.  15  26       719      712.8  Left-Accumbens-area               69.7107     6.7364    46.0000    92.0000    46.0000 
    96. 

  96.  16  28      4453     4296.4  Left-VentralDC                    86.6849    11.9444    16.0000   122.0000   106.0000 
    97. 

  97.  17  30        16       27.7  Left-vessel                       51.1250    11.2302    31.0000    72.0000    41.0000 
    98. 

  98.  18  31       586      514.7  Left-choroid-plexus               54.8396    15.3277    16.0000    95.0000    79.0000 
    99. 

  99.  19  43      5227     5387.5  Right-Lateral-Ventricle           28.3956    14.8943     0.0000    81.0000    81.0000 
    100. 

  100.  20  44       237      265.7  Right-Inf-Lat-Vent                40.8692    15.8816     6.0000    92.0000    86.0000 
    101. 

  101.  21  46     18002    18078.0  Right-Cerebellum-White-Matter     75.4461     7.7057    36.0000   106.0000    70.0000 
    102. 

  102.  22  47     59190    59461.3  Right-Cerebellum-Cortex           54.6449    10.5847     3.0000    98.0000    95.0000 
    103. 

  103.  23  49      8528     8357.1  Right-Thalamus-Proper             82.8668     9.5409    16.0000   112.0000    96.0000 
    104. 

  104.  24  50      4497     4472.0  Right-Caudate                     72.9691     8.6970    37.0000   107.0000    70.0000 
    105. 

  105.  25  51      5506     5477.4  Right-Putamen                     77.3108     8.0660    31.0000    99.0000    68.0000 
    106. 

  106.  26  52      2053     1989.6  Right-Pallidum                    91.8821     7.0858    60.0000   114.0000    54.0000 
    107. 

  107.  27  53      4669     4492.8  Right-Hippocampus                 62.3791     9.6727     6.0000    97.0000    91.0000 
    108. 

  108.  28  54      2026     1909.2  Right-Amygdala                    60.5888     7.9658    20.0000    87.0000    67.0000 
    109. 

  109.  29  58       734      718.2  Right-Accumbens-area              68.5858     7.0651    40.0000    94.0000    54.0000 
    110. 

  110.  30  60      4588     4398.3  Right-VentralDC                   84.8160    11.2960    30.0000   118.0000    88.0000 
    111. 

  111.  31  62        18       23.7  Right-vessel                      53.5000    10.3199    29.0000    67.0000    38.0000 
    112. 

  112.  32  63       622      555.2  Right-choroid-plexus              52.5402    13.2050    19.0000    86.0000    67.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1085     1025.8  WM-hypointensities                68.7088    14.2457     4.0000    97.0000    93.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       173      176.8  Optic-Chiasm                      79.0000    17.6599    22.0000   111.0000    89.0000 
    121. 

  121.  41 251      1051      986.1  CC_Posterior                      98.3787    15.4817    19.0000   123.0000   104.0000 
    122. 

  122.  42 252       684      614.6  CC_Mid_Posterior                  91.6623    18.2857     6.0000   124.0000   118.0000 
    123. 

  123.  43 253       560      526.9  CC_Central                        97.1054    13.7061    41.0000   121.0000    80.0000 
    124. 

  124.  44 254       702      634.8  CC_Mid_Anterior                   95.0256    17.2122    17.0000   122.0000   105.0000 
    125. 

  125.  45 255       933      896.5  CC_Anterior                      102.3258    17.3846     6.0000   159.0000   153.0000 
    126.