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0051278
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051278 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-935
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051278
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8248.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 203568.657823, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 205524.959646, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 409093.617469, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1604409.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1469302.698703, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 06:01:31 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 22:22:38 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 22:22:38 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      2198     2225.2  wm-lh-bankssts                    97.2270    10.1929    65.0000   126.0000    61.0000 
    66. 

  66.   2 3002      2463     2434.1  wm-lh-caudalanteriorcingulate    102.7328    10.5991    65.0000   138.0000    73.0000 
    67. 

  67.   3 3003      5786     5807.8  wm-lh-caudalmiddlefrontal         97.5434    11.5269    57.0000   128.0000    71.0000 
    68. 

  68.   4 3005      1964     1984.6  wm-lh-cuneus                      91.1945    12.3666    62.0000   121.0000    59.0000 
    69. 

  69.   5 3006       559      608.6  wm-lh-entorhinal                  72.4293     8.8584    45.0000   105.0000    60.0000 
    70. 

  70.   6 3007      6278     6138.7  wm-lh-fusiform                    86.7276    12.2228    47.0000   118.0000    71.0000 
    71. 

  71.   7 3008      8161     8354.7  wm-lh-inferiorparietal           100.0365    12.1267    62.0000   133.0000    71.0000 
    72. 

  72.   8 3009      5041     5144.8  wm-lh-inferiortemporal            84.5755    12.3261    50.0000   119.0000    69.0000 
    73. 

  73.   9 3010      3811     3808.7  wm-lh-isthmuscingulate           100.4201    11.9975    27.0000   132.0000   105.0000 
    74. 

  74.  10 3011      8891     9211.5  wm-lh-lateraloccipital            95.0678    12.1347    55.0000   133.0000    78.0000 
    75. 

  75.  11 3012      6749     6671.3  wm-lh-lateralorbitofrontal        95.4592    12.9698    52.0000   127.0000    75.0000 
    76. 

  76.  12 3013      4834     4840.5  wm-lh-lingual                     90.0066    12.0161    37.0000   125.0000    88.0000 
    77. 

  77.  13 3014      3457     3521.4  wm-lh-medialorbitofrontal         94.9743    13.5853    51.0000   127.0000    76.0000 
    78. 

  78.  14 3015      5134     5362.6  wm-lh-middletemporal              88.2766    11.2494    54.0000   122.0000    68.0000 
    79. 

  79.  15 3016      1422     1508.7  wm-lh-parahippocampal             82.5014     9.9722    48.0000   112.0000    64.0000 
    80. 

  80.  16 3017      4150     4153.9  wm-lh-paracentral                 97.4542    10.8099    61.0000   123.0000    62.0000 
    81. 

  81.  17 3018      2942     2980.0  wm-lh-parsopercularis             99.1156    12.4325    61.0000   131.0000    70.0000 
    82. 

  82.  18 3019       912      979.2  wm-lh-parsorbitalis               90.1853    11.0366    63.0000   132.0000    69.0000 
    83. 

  83.  19 3020      2914     3005.9  wm-lh-parstriangularis           100.6489    10.7761    67.0000   128.0000    61.0000 
    84. 

  84.  20 3021      2662     2494.6  wm-lh-pericalcarine               90.8099    11.5650    27.0000   119.0000    92.0000 
    85. 

  85.  21 3022      5927     6094.5  wm-lh-postcentral                 90.7299    12.6946    54.0000   125.0000    71.0000 
    86. 

  86.  22 3023      4577     4484.1  wm-lh-posteriorcingulate          99.3976    11.1707    44.0000   129.0000    85.0000 
    87. 

  87.  23 3024     12257    12433.4  wm-lh-precentral                  97.0837    12.0983    61.0000   130.0000    69.0000 
    88. 

  88.  24 3025      7997     8103.7  wm-lh-precuneus                   98.6946    11.9831    37.0000   132.0000    95.0000 
    89. 

  89.  25 3026      2483     2407.2  wm-lh-rostralanteriorcingulate    99.7874    15.4483    15.0000   136.0000   121.0000 
    90. 

  90.  26 3027      8721     8876.4  wm-lh-rostralmiddlefrontal        95.6490    12.5835    58.0000   128.0000    70.0000 
    91. 

  91.  27 3028     15687    15887.5  wm-lh-superiorfrontal             91.9236    11.9428    50.0000   125.0000    75.0000 
    92. 

  92.  28 3029     11069    11409.2  wm-lh-superiorparietal            99.0423    11.6323    61.0000   136.0000    75.0000 
    93. 

  93.  29 3030      7008     7261.3  wm-lh-superiortemporal            92.1425    11.3227    51.0000   124.0000    73.0000 
    94. 

  94.  30 3031      8915     9148.2  wm-lh-supramarginal               99.0728    11.9542    60.0000   131.0000    71.0000 
    95. 

  95.  31 3032       231      232.5  wm-lh-frontalpole                 84.3074     9.4935    63.0000   107.0000    44.0000 
    96. 

  96.  32 3033       615      654.2  wm-lh-temporalpole                70.3789     8.8364    48.0000    99.0000    51.0000 
    97. 

  97.  33 3034       533      542.4  wm-lh-transversetemporal          91.4540     8.0686    67.0000   113.0000    46.0000 
    98. 

  98.  34 3035      8610     8540.3  wm-lh-insula                      92.7459    13.2144    33.0000   123.0000    90.0000 
    99. 

  99.  35 4001      1718     1715.5  wm-rh-bankssts                   102.5198     9.4079    70.0000   130.0000    60.0000 
    100. 

  100.  36 4002      2338     2339.2  wm-rh-caudalanteriorcingulate    102.1386    10.8972    69.0000   134.0000    65.0000 
    101. 

  101.  37 4003      5387     5406.6  wm-rh-caudalmiddlefrontal         95.3343    11.5178    51.0000   121.0000    70.0000 
    102. 

  102.  38 4005      2479     2576.3  wm-rh-cuneus                      88.7636    10.1854    64.0000   117.0000    53.0000 
    103. 

  103.  39 4006       760      829.2  wm-rh-entorhinal                  74.4395     9.5509    50.0000   109.0000    59.0000 
    104. 

  104.  40 4007      6354     6244.2  wm-rh-fusiform                    88.8100    12.4013    45.0000   117.0000    72.0000 
    105. 

  105.  41 4008     10639    10841.2  wm-rh-inferiorparietal           100.2404    11.8565    60.0000   131.0000    71.0000 
    106. 

  106.  42 4009      5391     5464.7  wm-rh-inferiortemporal            88.2324    13.6074    49.0000   124.0000    75.0000 
    107. 

  107.  43 4010      3411     3385.5  wm-rh-isthmuscingulate            98.4890    11.4976    36.0000   129.0000    93.0000 
    108. 

  108.  44 4011      9707     9915.1  wm-rh-lateraloccipital            90.4191    11.4508    53.0000   127.0000    74.0000 
    109. 

  109.  45 4012      6082     6009.2  wm-rh-lateralorbitofrontal        91.1133    12.4881    49.0000   119.0000    70.0000 
    110. 

  110.  46 4013      5529     5661.0  wm-rh-lingual                     87.6540    11.3187    53.0000   119.0000    66.0000 
    111. 

  111.  47 4014      3599     3632.0  wm-rh-medialorbitofrontal         94.1981    12.2775    50.0000   125.0000    75.0000 
    112. 

  112.  48 4015      5213     5386.9  wm-rh-middletemporal              90.7882    14.5363    51.0000   129.0000    78.0000 
    113. 

  113.  49 4016      1519     1597.2  wm-rh-parahippocampal             83.3002     9.7404    49.0000   111.0000    62.0000 
    114. 

  114.  50 4017      4737     4691.8  wm-rh-paracentral                 97.1910    10.7584    62.0000   123.0000    61.0000 
    115. 

  115.  51 4018      3151     3117.1  wm-rh-parsopercularis             93.6563    12.9078    60.0000   120.0000    60.0000 
    116. 

  116.  52 4019      1311     1319.9  wm-rh-parsorbitalis               84.1998    11.4253    55.0000   120.0000    65.0000 
    117. 

  117.  53 4020      3988     4003.3  wm-rh-parstriangularis            92.0028    12.0960    51.0000   121.0000    70.0000 
    118. 

  118.  54 4021      2955     2888.4  wm-rh-pericalcarine               89.3882    10.1268    52.0000   127.0000    75.0000 
    119. 

  119.  55 4022      6132     6251.8  wm-rh-postcentral                 94.7898    13.3085    58.0000   130.0000    72.0000 
    120. 

  120.  56 4023      4034     3971.3  wm-rh-posteriorcingulate          99.1049    10.8618    51.0000   136.0000    85.0000 
    121. 

  121.  57 4024     12641    12647.7  wm-rh-precentral                  97.3031    12.1581    57.0000   128.0000    71.0000 
    122. 

  122.  58 4025      7658     7609.4  wm-rh-precuneus                   93.5358    11.2252    60.0000   121.0000    61.0000 
    123. 

  123.  59 4026      1909     1874.3  wm-rh-rostralanteriorcingulate    99.0770    14.2323    60.0000   135.0000    75.0000 
    124. 

  124.  60 4027      9172     9367.8  wm-rh-rostralmiddlefrontal        94.6282    11.6653    57.0000   124.0000    67.0000 
    125. 

  125.  61 4028     14457    14601.4  wm-rh-superiorfrontal             92.4841    12.2475    51.0000   124.0000    73.0000 
    126. 

  126.  62 4029     10780    11045.6  wm-rh-superiorparietal            95.8930    12.3118    58.0000   134.0000    76.0000 
    127. 

  127.  63 4030      5376     5569.0  wm-rh-superiortemporal            92.3495    14.3782    50.0000   127.0000    77.0000 
    128. 

  128.  64 4031      8174     8216.6  wm-rh-supramarginal              104.6051    11.6229    66.0000   140.0000    74.0000 
    129. 

  129.  65 4032       275      290.3  wm-rh-frontalpole                 89.2145    10.6223    69.0000   112.0000    43.0000 
    130. 

  130.  66 4033       696      701.5  wm-rh-temporalpole                69.6753     8.0157    50.0000    92.0000    42.0000 
    131. 

  131.  67 4034       502      486.6  wm-rh-transversetemporal          98.4004    10.0469    67.0000   129.0000    62.0000 
    132. 

  132.  68 4035      9223     9134.6  wm-rh-insula                      89.9256    14.2354    28.0000   125.0000    97.0000 
    133. 

  133.  69 5001     27152    26956.1  Left-UnsegmentedWhiteMatter       99.3715    12.1413    19.0000   138.0000   119.0000 
    134. 

  134.  70 5002     25899    25826.7  Right-UnsegmentedWhiteMatter     100.5155     9.9893    15.0000   130.0000   115.0000 
    135.