wmparc.stats 11 KB

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  1. # Title Segmentation Statistics
  2. #
  3. # generating_program mri_segstats
  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051226 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
  6. # sysname Linux
  7. # hostname tars-902
  8. # machine x86_64
  9. # user ntraut
  10. # anatomy_type volume
  11. #
  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
  13. # subjectname 0051226
  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 7523.000000, mm^3
  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 180571.191146, mm^3
  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 177800.479033, mm^3
  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 358371.670179, mm^3
  18. # Measure Mask, MaskVol, Mask Volume, 1441468.000000, mm^3
  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1300125.707434, mm^3
  20. # SegVolFile mri/wmparc.mgz
  21. # SegVolFileTimeStamp 2017/10/08 05:01:29
  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt
  23. # ColorTableTimeStamp 2017/01/18 23:00:02
  24. # InVolFile mri/norm.mgz
  25. # InVolFileTimeStamp 2017/10/07 21:27:07
  26. # InVolFrame 0
  27. # PVVolFile mri/norm.mgz
  28. # PVVolFileTimeStamp 2017/10/07 21:27:07
  29. # ExcludeSegId 0
  30. # Only reporting non-empty segmentations
  31. # VoxelVolume_mm3 1
  32. # TableCol 1 ColHeader Index
  33. # TableCol 1 FieldName Index
  34. # TableCol 1 Units NA
  35. # TableCol 2 ColHeader SegId
  36. # TableCol 2 FieldName Segmentation Id
  37. # TableCol 2 Units NA
  38. # TableCol 3 ColHeader NVoxels
  39. # TableCol 3 FieldName Number of Voxels
  40. # TableCol 3 Units unitless
  41. # TableCol 4 ColHeader Volume_mm3
  42. # TableCol 4 FieldName Volume
  43. # TableCol 4 Units mm^3
  44. # TableCol 5 ColHeader StructName
  45. # TableCol 5 FieldName Structure Name
  46. # TableCol 5 Units NA
  47. # TableCol 6 ColHeader normMean
  48. # TableCol 6 FieldName Intensity normMean
  49. # TableCol 6 Units MR
  50. # TableCol 7 ColHeader normStdDev
  51. # TableCol 7 FieldName Itensity normStdDev
  52. # TableCol 7 Units MR
  53. # TableCol 8 ColHeader normMin
  54. # TableCol 8 FieldName Intensity normMin
  55. # TableCol 8 Units MR
  56. # TableCol 9 ColHeader normMax
  57. # TableCol 9 FieldName Intensity normMax
  58. # TableCol 9 Units MR
  59. # TableCol 10 ColHeader normRange
  60. # TableCol 10 FieldName Intensity normRange
  61. # TableCol 10 Units MR
  62. # NRows 70
  63. # NTableCols 10
  64. # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
  65. 1 3001 2182 2169.6 wm-lh-bankssts 101.1288 9.0940 70.0000 126.0000 56.0000
  66. 2 3002 2534 2455.4 wm-lh-caudalanteriorcingulate 103.3035 13.2108 45.0000 140.0000 95.0000
  67. 3 3003 5180 5140.0 wm-lh-caudalmiddlefrontal 96.9272 12.5051 57.0000 124.0000 67.0000
  68. 4 3005 2228 2225.8 wm-lh-cuneus 95.0498 12.3462 65.0000 123.0000 58.0000
  69. 5 3006 674 695.0 wm-lh-entorhinal 70.2062 9.0041 7.0000 94.0000 87.0000
  70. 6 3007 5641 5611.4 wm-lh-fusiform 89.6885 14.5907 19.0000 127.0000 108.0000
  71. 7 3008 7435 7447.5 wm-lh-inferiorparietal 99.4646 11.4134 61.0000 126.0000 65.0000
  72. 8 3009 4918 4964.4 wm-lh-inferiortemporal 87.3707 13.6263 50.0000 126.0000 76.0000
  73. 9 3010 3241 3186.9 wm-lh-isthmuscingulate 100.2027 12.4039 25.0000 125.0000 100.0000
  74. 10 3011 7813 8061.9 wm-lh-lateraloccipital 98.3117 11.7964 62.0000 130.0000 68.0000
  75. 11 3012 5349 5267.2 wm-lh-lateralorbitofrontal 94.2810 13.4993 51.0000 127.0000 76.0000
  76. 12 3013 3615 3629.4 wm-lh-lingual 90.2349 12.7056 31.0000 128.0000 97.0000
  77. 13 3014 3606 3542.3 wm-lh-medialorbitofrontal 91.1223 15.0065 16.0000 128.0000 112.0000
  78. 14 3015 3899 3989.4 wm-lh-middletemporal 86.5666 11.8654 54.0000 116.0000 62.0000
  79. 15 3016 1172 1239.2 wm-lh-parahippocampal 80.2031 10.8875 36.0000 109.0000 73.0000
  80. 16 3017 3285 3281.9 wm-lh-paracentral 98.5851 9.7508 69.0000 125.0000 56.0000
  81. 17 3018 3525 3456.0 wm-lh-parsopercularis 100.6479 12.9833 62.0000 128.0000 66.0000
  82. 18 3019 771 757.0 wm-lh-parsorbitalis 88.4358 11.5224 62.0000 120.0000 58.0000
  83. 19 3020 2905 2911.6 wm-lh-parstriangularis 100.1539 12.2602 57.0000 127.0000 70.0000
  84. 20 3021 2941 2853.1 wm-lh-pericalcarine 98.8820 12.9319 36.0000 133.0000 97.0000
  85. 21 3022 5401 5555.3 wm-lh-postcentral 94.6103 11.4666 64.0000 127.0000 63.0000
  86. 22 3023 4552 4358.4 wm-lh-posteriorcingulate 100.4449 11.6139 43.0000 128.0000 85.0000
  87. 23 3024 10379 10346.2 wm-lh-precentral 98.6893 11.5328 64.0000 128.0000 64.0000
  88. 24 3025 7050 7001.5 wm-lh-precuneus 98.3123 12.2842 38.0000 134.0000 96.0000
  89. 25 3026 1964 1855.9 wm-lh-rostralanteriorcingulate 102.5962 15.2372 60.0000 134.0000 74.0000
  90. 26 3027 9590 9573.0 wm-lh-rostralmiddlefrontal 96.2557 12.5446 57.0000 127.0000 70.0000
  91. 27 3028 13738 13737.8 wm-lh-superiorfrontal 93.5967 12.0693 58.0000 126.0000 68.0000
  92. 28 3029 9658 9776.6 wm-lh-superiorparietal 98.4784 11.8184 60.0000 127.0000 67.0000
  93. 29 3030 6772 6919.1 wm-lh-superiortemporal 93.1989 12.4477 54.0000 125.0000 71.0000
  94. 30 3031 7405 7393.4 wm-lh-supramarginal 98.6935 12.0353 61.0000 128.0000 67.0000
  95. 31 3032 242 249.4 wm-lh-frontalpole 84.4339 10.2999 62.0000 117.0000 55.0000
  96. 32 3033 604 634.0 wm-lh-temporalpole 69.5298 8.0766 52.0000 96.0000 44.0000
  97. 33 3034 752 748.1 wm-lh-transversetemporal 96.1769 9.9823 68.0000 119.0000 51.0000
  98. 34 3035 8495 8423.8 wm-lh-insula 93.2889 14.2460 42.0000 126.0000 84.0000
  99. 35 4001 2286 2286.9 wm-rh-bankssts 103.5311 7.6588 76.0000 125.0000 49.0000
  100. 36 4002 2497 2455.0 wm-rh-caudalanteriorcingulate 104.2964 13.9517 42.0000 134.0000 92.0000
  101. 37 4003 4595 4576.2 wm-rh-caudalmiddlefrontal 98.1719 11.1738 63.0000 122.0000 59.0000
  102. 38 4005 2208 2282.1 wm-rh-cuneus 89.7156 9.9586 61.0000 115.0000 54.0000
  103. 39 4006 545 541.9 wm-rh-entorhinal 71.3138 7.7653 52.0000 96.0000 44.0000
  104. 40 4007 5382 5376.3 wm-rh-fusiform 88.8595 12.5676 29.0000 124.0000 95.0000
  105. 41 4008 9596 9723.4 wm-rh-inferiorparietal 97.9882 11.0861 62.0000 128.0000 66.0000
  106. 42 4009 4725 4734.8 wm-rh-inferiortemporal 88.9983 13.1840 47.0000 120.0000 73.0000
  107. 43 4010 2685 2638.6 wm-rh-isthmuscingulate 99.6000 11.2889 35.0000 124.0000 89.0000
  108. 44 4011 7601 7767.6 wm-rh-lateraloccipital 89.5455 10.9441 60.0000 120.0000 60.0000
  109. 45 4012 4870 4835.1 wm-rh-lateralorbitofrontal 92.7801 13.7533 51.0000 125.0000 74.0000
  110. 46 4013 4545 4615.3 wm-rh-lingual 87.6323 12.1200 28.0000 122.0000 94.0000
  111. 47 4014 2917 2865.9 wm-rh-medialorbitofrontal 92.9297 13.8916 50.0000 127.0000 77.0000
  112. 48 4015 5122 5251.0 wm-rh-middletemporal 92.7673 12.9134 53.0000 126.0000 73.0000
  113. 49 4016 1067 1132.4 wm-rh-parahippocampal 82.8201 8.8060 59.0000 107.0000 48.0000
  114. 50 4017 3850 3797.6 wm-rh-paracentral 97.6431 10.1710 63.0000 122.0000 59.0000
  115. 51 4018 2737 2679.4 wm-rh-parsopercularis 96.5678 12.9097 62.0000 126.0000 64.0000
  116. 52 4019 890 889.2 wm-rh-parsorbitalis 89.1753 12.2779 58.0000 125.0000 67.0000
  117. 53 4020 2900 2926.7 wm-rh-parstriangularis 95.2938 12.4418 60.0000 128.0000 68.0000
  118. 54 4021 2919 2801.7 wm-rh-pericalcarine 87.8188 10.6582 43.0000 115.0000 72.0000
  119. 55 4022 5298 5408.5 wm-rh-postcentral 96.2157 11.2681 66.0000 124.0000 58.0000
  120. 56 4023 4265 4093.9 wm-rh-posteriorcingulate 99.6073 12.1394 38.0000 128.0000 90.0000
  121. 57 4024 10636 10628.8 wm-rh-precentral 98.3939 11.1427 63.0000 129.0000 66.0000
  122. 58 4025 7315 7227.1 wm-rh-precuneus 95.5899 10.7317 31.0000 123.0000 92.0000
  123. 59 4026 1846 1795.4 wm-rh-rostralanteriorcingulate 107.0152 14.3389 66.0000 136.0000 70.0000
  124. 60 4027 9276 9429.9 wm-rh-rostralmiddlefrontal 99.0726 11.4737 62.0000 128.0000 66.0000
  125. 61 4028 13694 13713.1 wm-rh-superiorfrontal 96.5749 11.6964 57.0000 127.0000 70.0000
  126. 62 4029 8865 9030.4 wm-rh-superiorparietal 93.4731 11.7704 60.0000 132.0000 72.0000
  127. 63 4030 4783 4984.4 wm-rh-superiortemporal 93.8074 13.6483 54.0000 126.0000 72.0000
  128. 64 4031 6818 6958.8 wm-rh-supramarginal 102.9394 11.0220 68.0000 130.0000 62.0000
  129. 65 4032 305 292.0 wm-rh-frontalpole 85.3016 10.4009 63.0000 111.0000 48.0000
  130. 66 4033 676 701.3 wm-rh-temporalpole 68.1701 7.0117 50.0000 90.0000 40.0000
  131. 67 4034 504 486.3 wm-rh-transversetemporal 99.1012 8.4562 77.0000 118.0000 41.0000
  132. 68 4035 8841 8763.8 wm-rh-insula 93.2176 14.5477 31.0000 125.0000 94.0000
  133. 69 5001 19934 19662.9 Left-UnsegmentedWhiteMatter 100.5646 14.0732 15.0000 133.0000 118.0000
  134. 70 5002 19569 19457.7 Right-UnsegmentedWhiteMatter 100.2598 13.4749 14.0000 135.0000 121.0000