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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050988
- # sysname Linux
- # hostname tars-200
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050988
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1215051.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1193516.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1193650.214941, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 17526.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 273561.310078, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 277953.752038, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 551515.062116, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 219284.599081, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 218683.553744, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 437968.152825, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 61498.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 729509.062116, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1071580.214941, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1054054.214941, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1050763.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1597339.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.815732, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.072383, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 53, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 59, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 112, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1489522.967431, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 00:28:39
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 17:38:32
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 17:38:32
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7829 8093.9 Left-Lateral-Ventricle 18.7848 13.5742 0.0000 85.0000 85.0000
- 2 5 301 349.7 Left-Inf-Lat-Vent 37.7542 12.3951 6.0000 79.0000 73.0000
- 3 7 14035 14472.7 Left-Cerebellum-White-Matter 79.0968 9.7439 13.0000 130.0000 117.0000
- 4 8 56864 57134.0 Left-Cerebellum-Cortex 47.7246 11.8662 0.0000 136.0000 136.0000
- 5 10 7943 7655.0 Left-Thalamus-Proper 78.8639 11.1676 26.0000 129.0000 103.0000
- 6 11 4148 4138.6 Left-Caudate 65.1405 8.2954 36.0000 104.0000 68.0000
- 7 12 5653 5576.2 Left-Putamen 73.5762 7.2513 33.0000 100.0000 67.0000
- 8 13 2254 2178.4 Left-Pallidum 89.6757 5.7310 55.0000 106.0000 51.0000
- 9 14 1087 1144.5 3rd-Ventricle 25.8418 14.2971 0.0000 77.0000 77.0000
- 10 15 1663 1808.0 4th-Ventricle 18.1425 12.6860 0.0000 66.0000 66.0000
- 11 16 19458 19443.6 Brain-Stem 79.0009 13.5874 11.0000 169.0000 158.0000
- 12 17 4273 4088.5 Left-Hippocampus 56.3281 10.2028 16.0000 108.0000 92.0000
- 13 18 1631 1561.8 Left-Amygdala 56.6094 8.3402 26.0000 84.0000 58.0000
- 14 24 1259 1255.7 CSF 30.3511 14.7795 2.0000 78.0000 76.0000
- 15 26 575 560.3 Left-Accumbens-area 60.6591 6.5275 32.0000 88.0000 56.0000
- 16 28 4454 4223.6 Left-VentralDC 86.0260 14.3752 12.0000 140.0000 128.0000
- 17 30 20 25.7 Left-vessel 57.9500 10.1384 41.0000 76.0000 35.0000
- 18 31 612 561.2 Left-choroid-plexus 43.5980 13.0023 18.0000 80.0000 62.0000
- 19 43 7794 8009.6 Right-Lateral-Ventricle 18.6229 14.2116 0.0000 81.0000 81.0000
- 20 44 280 320.6 Right-Inf-Lat-Vent 33.2071 13.9562 5.0000 95.0000 90.0000
- 21 46 12117 12627.0 Right-Cerebellum-White-Matter 80.0063 9.2534 22.0000 131.0000 109.0000
- 22 47 58110 58405.0 Right-Cerebellum-Cortex 49.0134 12.1808 0.0000 113.0000 113.0000
- 23 49 7816 7486.7 Right-Thalamus-Proper 79.1827 10.7699 17.0000 127.0000 110.0000
- 24 50 4296 4202.5 Right-Caudate 65.3103 8.9347 24.0000 93.0000 69.0000
- 25 51 5481 5455.0 Right-Putamen 73.1713 6.9791 48.0000 98.0000 50.0000
- 26 52 2158 2019.8 Right-Pallidum 89.0218 5.7292 53.0000 107.0000 54.0000
- 27 53 4271 4165.3 Right-Hippocampus 57.3208 10.7241 5.0000 130.0000 125.0000
- 28 54 1674 1606.6 Right-Amygdala 57.1386 8.5271 22.0000 89.0000 67.0000
- 29 58 573 548.4 Right-Accumbens-area 62.3124 7.1357 40.0000 92.0000 52.0000
- 30 60 4344 4130.1 Right-VentralDC 85.3039 14.7120 9.0000 136.0000 127.0000
- 31 62 1 4.1 Right-vessel 53.0000 0.0000 53.0000 53.0000 0.0000
- 32 63 710 635.5 Right-choroid-plexus 43.4859 13.0049 9.0000 75.0000 66.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1195 1040.0 WM-hypointensities 66.5891 14.7875 3.0000 105.0000 102.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 132 125.4 Optic-Chiasm 83.2955 25.2383 18.0000 129.0000 111.0000
- 41 251 1082 1033.4 CC_Posterior 102.6497 14.0644 28.0000 120.0000 92.0000
- 42 252 616 559.6 CC_Mid_Posterior 91.0406 22.0001 7.0000 119.0000 112.0000
- 43 253 711 631.9 CC_Central 91.1716 18.8033 29.0000 131.0000 102.0000
- 44 254 654 591.4 CC_Mid_Anterior 96.4205 17.2897 34.0000 132.0000 98.0000
- 45 255 1304 1228.9 CC_Anterior 101.1948 18.5737 25.0000 134.0000 109.0000
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