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ABIDE_fs-6.0.0
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0050988
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050988 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-200
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050988
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1215051.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1193516.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1193650.214941, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 17526.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 273561.310078, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 277953.752038, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 551515.062116, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 219284.599081, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 218683.553744, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 437968.152825, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 61498.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 729509.062116, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1071580.214941, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1054054.214941, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1050763.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1597339.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.815732, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.072383, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 53, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 59, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 112, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1489522.967431, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 00:28:39 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 17:38:32 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 17:38:32 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      7829     8093.9  Left-Lateral-Ventricle            18.7848    13.5742     0.0000    85.0000    85.0000 
    82. 

  82.   2   5       301      349.7  Left-Inf-Lat-Vent                 37.7542    12.3951     6.0000    79.0000    73.0000 
    83. 

  83.   3   7     14035    14472.7  Left-Cerebellum-White-Matter      79.0968     9.7439    13.0000   130.0000   117.0000 
    84. 

  84.   4   8     56864    57134.0  Left-Cerebellum-Cortex            47.7246    11.8662     0.0000   136.0000   136.0000 
    85. 

  85.   5  10      7943     7655.0  Left-Thalamus-Proper              78.8639    11.1676    26.0000   129.0000   103.0000 
    86. 

  86.   6  11      4148     4138.6  Left-Caudate                      65.1405     8.2954    36.0000   104.0000    68.0000 
    87. 

  87.   7  12      5653     5576.2  Left-Putamen                      73.5762     7.2513    33.0000   100.0000    67.0000 
    88. 

  88.   8  13      2254     2178.4  Left-Pallidum                     89.6757     5.7310    55.0000   106.0000    51.0000 
    89. 

  89.   9  14      1087     1144.5  3rd-Ventricle                     25.8418    14.2971     0.0000    77.0000    77.0000 
    90. 

  90.  10  15      1663     1808.0  4th-Ventricle                     18.1425    12.6860     0.0000    66.0000    66.0000 
    91. 

  91.  11  16     19458    19443.6  Brain-Stem                        79.0009    13.5874    11.0000   169.0000   158.0000 
    92. 

  92.  12  17      4273     4088.5  Left-Hippocampus                  56.3281    10.2028    16.0000   108.0000    92.0000 
    93. 

  93.  13  18      1631     1561.8  Left-Amygdala                     56.6094     8.3402    26.0000    84.0000    58.0000 
    94. 

  94.  14  24      1259     1255.7  CSF                               30.3511    14.7795     2.0000    78.0000    76.0000 
    95. 

  95.  15  26       575      560.3  Left-Accumbens-area               60.6591     6.5275    32.0000    88.0000    56.0000 
    96. 

  96.  16  28      4454     4223.6  Left-VentralDC                    86.0260    14.3752    12.0000   140.0000   128.0000 
    97. 

  97.  17  30        20       25.7  Left-vessel                       57.9500    10.1384    41.0000    76.0000    35.0000 
    98. 

  98.  18  31       612      561.2  Left-choroid-plexus               43.5980    13.0023    18.0000    80.0000    62.0000 
    99. 

  99.  19  43      7794     8009.6  Right-Lateral-Ventricle           18.6229    14.2116     0.0000    81.0000    81.0000 
    100. 

  100.  20  44       280      320.6  Right-Inf-Lat-Vent                33.2071    13.9562     5.0000    95.0000    90.0000 
    101. 

  101.  21  46     12117    12627.0  Right-Cerebellum-White-Matter     80.0063     9.2534    22.0000   131.0000   109.0000 
    102. 

  102.  22  47     58110    58405.0  Right-Cerebellum-Cortex           49.0134    12.1808     0.0000   113.0000   113.0000 
    103. 

  103.  23  49      7816     7486.7  Right-Thalamus-Proper             79.1827    10.7699    17.0000   127.0000   110.0000 
    104. 

  104.  24  50      4296     4202.5  Right-Caudate                     65.3103     8.9347    24.0000    93.0000    69.0000 
    105. 

  105.  25  51      5481     5455.0  Right-Putamen                     73.1713     6.9791    48.0000    98.0000    50.0000 
    106. 

  106.  26  52      2158     2019.8  Right-Pallidum                    89.0218     5.7292    53.0000   107.0000    54.0000 
    107. 

  107.  27  53      4271     4165.3  Right-Hippocampus                 57.3208    10.7241     5.0000   130.0000   125.0000 
    108. 

  108.  28  54      1674     1606.6  Right-Amygdala                    57.1386     8.5271    22.0000    89.0000    67.0000 
    109. 

  109.  29  58       573      548.4  Right-Accumbens-area              62.3124     7.1357    40.0000    92.0000    52.0000 
    110. 

  110.  30  60      4344     4130.1  Right-VentralDC                   85.3039    14.7120     9.0000   136.0000   127.0000 
    111. 

  111.  31  62         1        4.1  Right-vessel                      53.0000     0.0000    53.0000    53.0000     0.0000 
    112. 

  112.  32  63       710      635.5  Right-choroid-plexus              43.4859    13.0049     9.0000    75.0000    66.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1195     1040.0  WM-hypointensities                66.5891    14.7875     3.0000   105.0000   102.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       132      125.4  Optic-Chiasm                      83.2955    25.2383    18.0000   129.0000   111.0000 
    121. 

  121.  41 251      1082     1033.4  CC_Posterior                     102.6497    14.0644    28.0000   120.0000    92.0000 
    122. 

  122.  42 252       616      559.6  CC_Mid_Posterior                  91.0406    22.0001     7.0000   119.0000   112.0000 
    123. 

  123.  43 253       711      631.9  CC_Central                        91.1716    18.8033    29.0000   131.0000   102.0000 
    124. 

  124.  44 254       654      591.4  CC_Mid_Anterior                   96.4205    17.2897    34.0000   132.0000    98.0000 
    125. 

  125.  45 255      1304     1228.9  CC_Anterior                      101.1948    18.5737    25.0000   134.0000   109.0000 
    126.