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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050974
- # sysname Linux
- # hostname tars-111
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050974
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1196737.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1184120.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1184059.303964, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 10032.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 273958.992216, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 277722.452089, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 551681.444305, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 213448.097597, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 217030.762062, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 430478.859659, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 60386.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 724514.444305, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1055406.303964, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1045374.303964, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1042498.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1545098.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.819767, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.058395, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 48, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 56, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 104, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1459849.820555, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 01:49:11
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 17:43:32
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 17:43:32
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3634 3924.3 Left-Lateral-Ventricle 25.3646 16.2275 0.0000 85.0000 85.0000
- 2 5 997 1008.2 Left-Inf-Lat-Vent 28.3290 16.2733 0.0000 73.0000 73.0000
- 3 7 15346 15601.6 Left-Cerebellum-White-Matter 79.9825 9.8246 0.0000 167.0000 167.0000
- 4 8 56498 56813.4 Left-Cerebellum-Cortex 49.6594 11.3987 1.0000 149.0000 148.0000
- 5 10 7840 7505.3 Left-Thalamus-Proper 77.3481 10.8101 22.0000 109.0000 87.0000
- 6 11 3670 3602.5 Left-Caudate 64.7458 8.2304 29.0000 100.0000 71.0000
- 7 12 5869 5751.6 Left-Putamen 72.7875 6.8660 52.0000 97.0000 45.0000
- 8 13 2072 1992.8 Left-Pallidum 87.8779 5.0109 67.0000 106.0000 39.0000
- 9 14 763 821.7 3rd-Ventricle 27.5203 13.3934 0.0000 60.0000 60.0000
- 10 15 1164 1303.0 4th-Ventricle 17.7698 13.0848 0.0000 65.0000 65.0000
- 11 16 20363 20330.4 Brain-Stem 80.2234 11.3759 14.0000 181.0000 167.0000
- 12 17 3824 3672.8 Left-Hippocampus 56.5732 10.2040 3.0000 129.0000 126.0000
- 13 18 1549 1488.2 Left-Amygdala 54.5720 8.8983 6.0000 92.0000 86.0000
- 14 24 658 660.3 CSF 30.8328 14.1824 0.0000 71.0000 71.0000
- 15 26 761 750.5 Left-Accumbens-area 62.1406 5.2294 39.0000 82.0000 43.0000
- 16 28 4718 4507.0 Left-VentralDC 84.1997 14.3091 17.0000 135.0000 118.0000
- 17 30 7 13.9 Left-vessel 54.8571 4.2201 49.0000 62.0000 13.0000
- 18 31 356 309.3 Left-choroid-plexus 55.3258 12.1734 23.0000 84.0000 61.0000
- 19 43 3921 4299.7 Right-Lateral-Ventricle 22.7154 16.1991 0.0000 86.0000 86.0000
- 20 44 964 1004.8 Right-Inf-Lat-Vent 25.6878 16.5826 0.0000 83.0000 83.0000
- 21 46 13694 14052.6 Right-Cerebellum-White-Matter 79.9155 8.6845 29.0000 114.0000 85.0000
- 22 47 54658 55109.7 Right-Cerebellum-Cortex 50.1051 11.3285 0.0000 137.0000 137.0000
- 23 49 7569 7253.0 Right-Thalamus-Proper 77.0945 10.4947 26.0000 103.0000 77.0000
- 24 50 3972 3897.5 Right-Caudate 64.9721 8.7373 29.0000 89.0000 60.0000
- 25 51 5728 5658.9 Right-Putamen 72.5679 6.7961 52.0000 97.0000 45.0000
- 26 52 1960 1843.1 Right-Pallidum 88.2168 4.8688 63.0000 104.0000 41.0000
- 27 53 3962 3790.1 Right-Hippocampus 57.9207 10.3462 18.0000 130.0000 112.0000
- 28 54 1665 1607.6 Right-Amygdala 54.7225 8.8405 5.0000 87.0000 82.0000
- 29 58 709 700.4 Right-Accumbens-area 62.0860 5.6720 26.0000 81.0000 55.0000
- 30 60 4564 4315.4 Right-VentralDC 82.8076 15.4197 0.0000 134.0000 134.0000
- 31 62 19 29.5 Right-vessel 55.0526 6.5614 42.0000 68.0000 26.0000
- 32 63 392 343.6 Right-choroid-plexus 53.5408 13.7832 20.0000 82.0000 62.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1726 1566.9 WM-hypointensities 62.0591 17.1064 0.0000 95.0000 95.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 170 183.2 Optic-Chiasm 87.4588 22.8232 16.0000 132.0000 116.0000
- 41 251 297 282.4 CC_Posterior 93.9158 18.8745 11.0000 123.0000 112.0000
- 42 252 520 471.4 CC_Mid_Posterior 91.0519 20.3472 17.0000 130.0000 113.0000
- 43 253 472 424.1 CC_Central 95.7797 18.8398 26.0000 132.0000 106.0000
- 44 254 628 557.9 CC_Mid_Anterior 94.9379 20.6840 10.0000 133.0000 123.0000
- 45 255 780 743.4 CC_Anterior 104.5269 15.9748 42.0000 134.0000 92.0000
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