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ABIDE_fs-6.0.0
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0050974
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050974 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-111
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050974
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1196737.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1184120.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1184059.303964, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 10032.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 273958.992216, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 277722.452089, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 551681.444305, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 213448.097597, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 217030.762062, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 430478.859659, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 60386.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 724514.444305, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1055406.303964, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1045374.303964, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1042498.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1545098.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.819767, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.058395, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 48, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 56, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 104, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1459849.820555, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 01:49:11 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 17:43:32 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 17:43:32 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      3634     3924.3  Left-Lateral-Ventricle            25.3646    16.2275     0.0000    85.0000    85.0000 
    82. 

  82.   2   5       997     1008.2  Left-Inf-Lat-Vent                 28.3290    16.2733     0.0000    73.0000    73.0000 
    83. 

  83.   3   7     15346    15601.6  Left-Cerebellum-White-Matter      79.9825     9.8246     0.0000   167.0000   167.0000 
    84. 

  84.   4   8     56498    56813.4  Left-Cerebellum-Cortex            49.6594    11.3987     1.0000   149.0000   148.0000 
    85. 

  85.   5  10      7840     7505.3  Left-Thalamus-Proper              77.3481    10.8101    22.0000   109.0000    87.0000 
    86. 

  86.   6  11      3670     3602.5  Left-Caudate                      64.7458     8.2304    29.0000   100.0000    71.0000 
    87. 

  87.   7  12      5869     5751.6  Left-Putamen                      72.7875     6.8660    52.0000    97.0000    45.0000 
    88. 

  88.   8  13      2072     1992.8  Left-Pallidum                     87.8779     5.0109    67.0000   106.0000    39.0000 
    89. 

  89.   9  14       763      821.7  3rd-Ventricle                     27.5203    13.3934     0.0000    60.0000    60.0000 
    90. 

  90.  10  15      1164     1303.0  4th-Ventricle                     17.7698    13.0848     0.0000    65.0000    65.0000 
    91. 

  91.  11  16     20363    20330.4  Brain-Stem                        80.2234    11.3759    14.0000   181.0000   167.0000 
    92. 

  92.  12  17      3824     3672.8  Left-Hippocampus                  56.5732    10.2040     3.0000   129.0000   126.0000 
    93. 

  93.  13  18      1549     1488.2  Left-Amygdala                     54.5720     8.8983     6.0000    92.0000    86.0000 
    94. 

  94.  14  24       658      660.3  CSF                               30.8328    14.1824     0.0000    71.0000    71.0000 
    95. 

  95.  15  26       761      750.5  Left-Accumbens-area               62.1406     5.2294    39.0000    82.0000    43.0000 
    96. 

  96.  16  28      4718     4507.0  Left-VentralDC                    84.1997    14.3091    17.0000   135.0000   118.0000 
    97. 

  97.  17  30         7       13.9  Left-vessel                       54.8571     4.2201    49.0000    62.0000    13.0000 
    98. 

  98.  18  31       356      309.3  Left-choroid-plexus               55.3258    12.1734    23.0000    84.0000    61.0000 
    99. 

  99.  19  43      3921     4299.7  Right-Lateral-Ventricle           22.7154    16.1991     0.0000    86.0000    86.0000 
    100. 

  100.  20  44       964     1004.8  Right-Inf-Lat-Vent                25.6878    16.5826     0.0000    83.0000    83.0000 
    101. 

  101.  21  46     13694    14052.6  Right-Cerebellum-White-Matter     79.9155     8.6845    29.0000   114.0000    85.0000 
    102. 

  102.  22  47     54658    55109.7  Right-Cerebellum-Cortex           50.1051    11.3285     0.0000   137.0000   137.0000 
    103. 

  103.  23  49      7569     7253.0  Right-Thalamus-Proper             77.0945    10.4947    26.0000   103.0000    77.0000 
    104. 

  104.  24  50      3972     3897.5  Right-Caudate                     64.9721     8.7373    29.0000    89.0000    60.0000 
    105. 

  105.  25  51      5728     5658.9  Right-Putamen                     72.5679     6.7961    52.0000    97.0000    45.0000 
    106. 

  106.  26  52      1960     1843.1  Right-Pallidum                    88.2168     4.8688    63.0000   104.0000    41.0000 
    107. 

  107.  27  53      3962     3790.1  Right-Hippocampus                 57.9207    10.3462    18.0000   130.0000   112.0000 
    108. 

  108.  28  54      1665     1607.6  Right-Amygdala                    54.7225     8.8405     5.0000    87.0000    82.0000 
    109. 

  109.  29  58       709      700.4  Right-Accumbens-area              62.0860     5.6720    26.0000    81.0000    55.0000 
    110. 

  110.  30  60      4564     4315.4  Right-VentralDC                   82.8076    15.4197     0.0000   134.0000   134.0000 
    111. 

  111.  31  62        19       29.5  Right-vessel                      55.0526     6.5614    42.0000    68.0000    26.0000 
    112. 

  112.  32  63       392      343.6  Right-choroid-plexus              53.5408    13.7832    20.0000    82.0000    62.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1726     1566.9  WM-hypointensities                62.0591    17.1064     0.0000    95.0000    95.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       170      183.2  Optic-Chiasm                      87.4588    22.8232    16.0000   132.0000   116.0000 
    121. 

  121.  41 251       297      282.4  CC_Posterior                      93.9158    18.8745    11.0000   123.0000   112.0000 
    122. 

  122.  42 252       520      471.4  CC_Mid_Posterior                  91.0519    20.3472    17.0000   130.0000   113.0000 
    123. 

  123.  43 253       472      424.1  CC_Central                        95.7797    18.8398    26.0000   132.0000   106.0000 
    124. 

  124.  44 254       628      557.9  CC_Mid_Anterior                   94.9379    20.6840    10.0000   133.0000   123.0000 
    125. 

  125.  45 255       780      743.4  CC_Anterior                      104.5269    15.9748    42.0000   134.0000    92.0000 
    126.