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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050562
- # sysname Linux
- # hostname tars-376
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050562
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1325198.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1312166.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1311876.512440, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9164.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 279258.342446, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 289429.942410, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 568688.284856, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 253204.903803, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 256542.323781, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 509747.227584, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 72140.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 775801.284856, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1161816.512440, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1152652.512440, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1150829.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1805357.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.799437, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.089097, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 122, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 41, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 163, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1657663.600357, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 20:22:36
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/08 02:04:47
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/08 02:04:47
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 4392 4772.3 Left-Lateral-Ventricle 31.6585 14.3732 3.0000 82.0000 79.0000
- 2 5 206 262.6 Left-Inf-Lat-Vent 48.3447 10.2364 19.0000 76.0000 57.0000
- 3 7 13698 14270.5 Left-Cerebellum-White-Matter 84.1437 7.3296 30.0000 106.0000 76.0000
- 4 8 67096 66808.5 Left-Cerebellum-Cortex 59.1657 9.0481 11.0000 102.0000 91.0000
- 5 10 9511 9276.9 Left-Thalamus-Proper 80.7043 9.6996 39.0000 103.0000 64.0000
- 6 11 4803 4608.4 Left-Caudate 69.3117 8.7708 38.0000 97.0000 59.0000
- 7 12 7035 7005.2 Left-Putamen 77.1016 5.6018 42.0000 96.0000 54.0000
- 8 13 2917 2674.9 Left-Pallidum 86.7120 4.7980 54.0000 100.0000 46.0000
- 9 14 747 876.6 3rd-Ventricle 43.9813 9.4793 18.0000 78.0000 60.0000
- 10 15 1907 2052.1 4th-Ventricle 24.4615 11.6789 2.0000 70.0000 68.0000
- 11 16 24270 24076.5 Brain-Stem 78.4947 9.4011 29.0000 102.0000 73.0000
- 12 17 4869 4759.6 Left-Hippocampus 63.3847 7.4766 31.0000 94.0000 63.0000
- 13 18 1967 1865.9 Left-Amygdala 63.4011 7.2031 37.0000 84.0000 47.0000
- 14 24 1214 1271.4 CSF 44.5692 12.3936 12.0000 81.0000 69.0000
- 15 26 825 838.5 Left-Accumbens-area 65.9382 4.9941 43.0000 83.0000 40.0000
- 16 28 4924 4659.4 Left-VentralDC 81.5431 11.1355 27.0000 133.0000 106.0000
- 17 30 56 73.7 Left-vessel 53.6964 8.6380 32.0000 70.0000 38.0000
- 18 31 485 449.1 Left-choroid-plexus 50.9113 13.5019 23.0000 78.0000 55.0000
- 19 43 3368 3617.9 Right-Lateral-Ventricle 37.5558 14.7853 6.0000 85.0000 79.0000
- 20 44 180 224.7 Right-Inf-Lat-Vent 44.0500 10.7127 20.0000 80.0000 60.0000
- 21 46 12542 13179.7 Right-Cerebellum-White-Matter 82.1579 6.6625 29.0000 101.0000 72.0000
- 22 47 67599 67381.6 Right-Cerebellum-Cortex 59.2097 8.8168 9.0000 96.0000 87.0000
- 23 49 8404 8001.9 Right-Thalamus-Proper 79.8015 9.5468 34.0000 101.0000 67.0000
- 24 50 4435 4358.2 Right-Caudate 72.3319 7.6239 43.0000 94.0000 51.0000
- 25 51 7344 7250.4 Right-Putamen 79.1806 6.1104 45.0000 97.0000 52.0000
- 26 52 2508 2336.8 Right-Pallidum 89.6794 4.9851 53.0000 103.0000 50.0000
- 27 53 4671 4528.5 Right-Hippocampus 65.0910 8.7541 4.0000 96.0000 92.0000
- 28 54 2186 2099.5 Right-Amygdala 64.1414 7.1229 31.0000 88.0000 57.0000
- 29 58 941 919.2 Right-Accumbens-area 68.3464 6.4276 50.0000 120.0000 70.0000
- 30 60 4850 4540.7 Right-VentralDC 82.4167 11.1246 27.0000 108.0000 81.0000
- 31 62 32 46.4 Right-vessel 54.5312 8.6695 37.0000 67.0000 30.0000
- 32 63 533 508.4 Right-choroid-plexus 52.9756 12.9685 22.0000 77.0000 55.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 2498 2215.5 WM-hypointensities 70.3415 10.4481 38.0000 101.0000 63.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 129 129.4 Optic-Chiasm 66.3178 14.4498 32.0000 96.0000 64.0000
- 41 251 718 680.3 CC_Posterior 92.2939 12.3430 40.0000 106.0000 66.0000
- 42 252 481 424.7 CC_Mid_Posterior 84.9813 13.2632 52.0000 107.0000 55.0000
- 43 253 490 450.9 CC_Central 89.7347 16.5269 14.0000 112.0000 98.0000
- 44 254 604 516.7 CC_Mid_Anterior 88.7682 19.0749 14.0000 112.0000 98.0000
- 45 255 872 815.1 CC_Anterior 95.0321 13.4260 49.0000 129.0000 80.0000
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