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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050562 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-376
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050562
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1325198.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1312166.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1311876.512440, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9164.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 279258.342446, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 289429.942410, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 568688.284856, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 253204.903803, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 256542.323781, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 509747.227584, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 72140.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 775801.284856, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1161816.512440, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1152652.512440, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1150829.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1805357.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.799437, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.089097, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 122, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 41, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 163, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1657663.600357, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 20:22:36 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 02:04:47 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 02:04:47 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      4392     4772.3  Left-Lateral-Ventricle            31.6585    14.3732     3.0000    82.0000    79.0000 
    82. 

  82.   2   5       206      262.6  Left-Inf-Lat-Vent                 48.3447    10.2364    19.0000    76.0000    57.0000 
    83. 

  83.   3   7     13698    14270.5  Left-Cerebellum-White-Matter      84.1437     7.3296    30.0000   106.0000    76.0000 
    84. 

  84.   4   8     67096    66808.5  Left-Cerebellum-Cortex            59.1657     9.0481    11.0000   102.0000    91.0000 
    85. 

  85.   5  10      9511     9276.9  Left-Thalamus-Proper              80.7043     9.6996    39.0000   103.0000    64.0000 
    86. 

  86.   6  11      4803     4608.4  Left-Caudate                      69.3117     8.7708    38.0000    97.0000    59.0000 
    87. 

  87.   7  12      7035     7005.2  Left-Putamen                      77.1016     5.6018    42.0000    96.0000    54.0000 
    88. 

  88.   8  13      2917     2674.9  Left-Pallidum                     86.7120     4.7980    54.0000   100.0000    46.0000 
    89. 

  89.   9  14       747      876.6  3rd-Ventricle                     43.9813     9.4793    18.0000    78.0000    60.0000 
    90. 

  90.  10  15      1907     2052.1  4th-Ventricle                     24.4615    11.6789     2.0000    70.0000    68.0000 
    91. 

  91.  11  16     24270    24076.5  Brain-Stem                        78.4947     9.4011    29.0000   102.0000    73.0000 
    92. 

  92.  12  17      4869     4759.6  Left-Hippocampus                  63.3847     7.4766    31.0000    94.0000    63.0000 
    93. 

  93.  13  18      1967     1865.9  Left-Amygdala                     63.4011     7.2031    37.0000    84.0000    47.0000 
    94. 

  94.  14  24      1214     1271.4  CSF                               44.5692    12.3936    12.0000    81.0000    69.0000 
    95. 

  95.  15  26       825      838.5  Left-Accumbens-area               65.9382     4.9941    43.0000    83.0000    40.0000 
    96. 

  96.  16  28      4924     4659.4  Left-VentralDC                    81.5431    11.1355    27.0000   133.0000   106.0000 
    97. 

  97.  17  30        56       73.7  Left-vessel                       53.6964     8.6380    32.0000    70.0000    38.0000 
    98. 

  98.  18  31       485      449.1  Left-choroid-plexus               50.9113    13.5019    23.0000    78.0000    55.0000 
    99. 

  99.  19  43      3368     3617.9  Right-Lateral-Ventricle           37.5558    14.7853     6.0000    85.0000    79.0000 
    100. 

  100.  20  44       180      224.7  Right-Inf-Lat-Vent                44.0500    10.7127    20.0000    80.0000    60.0000 
    101. 

  101.  21  46     12542    13179.7  Right-Cerebellum-White-Matter     82.1579     6.6625    29.0000   101.0000    72.0000 
    102. 

  102.  22  47     67599    67381.6  Right-Cerebellum-Cortex           59.2097     8.8168     9.0000    96.0000    87.0000 
    103. 

  103.  23  49      8404     8001.9  Right-Thalamus-Proper             79.8015     9.5468    34.0000   101.0000    67.0000 
    104. 

  104.  24  50      4435     4358.2  Right-Caudate                     72.3319     7.6239    43.0000    94.0000    51.0000 
    105. 

  105.  25  51      7344     7250.4  Right-Putamen                     79.1806     6.1104    45.0000    97.0000    52.0000 
    106. 

  106.  26  52      2508     2336.8  Right-Pallidum                    89.6794     4.9851    53.0000   103.0000    50.0000 
    107. 

  107.  27  53      4671     4528.5  Right-Hippocampus                 65.0910     8.7541     4.0000    96.0000    92.0000 
    108. 

  108.  28  54      2186     2099.5  Right-Amygdala                    64.1414     7.1229    31.0000    88.0000    57.0000 
    109. 

  109.  29  58       941      919.2  Right-Accumbens-area              68.3464     6.4276    50.0000   120.0000    70.0000 
    110. 

  110.  30  60      4850     4540.7  Right-VentralDC                   82.4167    11.1246    27.0000   108.0000    81.0000 
    111. 

  111.  31  62        32       46.4  Right-vessel                      54.5312     8.6695    37.0000    67.0000    30.0000 
    112. 

  112.  32  63       533      508.4  Right-choroid-plexus              52.9756    12.9685    22.0000    77.0000    55.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      2498     2215.5  WM-hypointensities                70.3415    10.4481    38.0000   101.0000    63.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       129      129.4  Optic-Chiasm                      66.3178    14.4498    32.0000    96.0000    64.0000 
    121. 

  121.  41 251       718      680.3  CC_Posterior                      92.2939    12.3430    40.0000   106.0000    66.0000 
    122. 

  122.  42 252       481      424.7  CC_Mid_Posterior                  84.9813    13.2632    52.0000   107.0000    55.0000 
    123. 

  123.  43 253       490      450.9  CC_Central                        89.7347    16.5269    14.0000   112.0000    98.0000 
    124. 

  124.  44 254       604      516.7  CC_Mid_Anterior                   88.7682    19.0749    14.0000   112.0000    98.0000 
    125. 

  125.  45 255       872      815.1  CC_Anterior                       95.0321    13.4260    49.0000   129.0000    80.0000 
    126.