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ABIDE_fs-6.0.0
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0050406
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050406 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-106
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050406
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1294188.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1272650.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1271641.086210, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 17067.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 279771.247317, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 282853.385783, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 562624.633101, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 241929.572184, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 248104.880925, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 490034.453109, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63411.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 751823.633101, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1136004.086210, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1118937.086210, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1116939.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1694596.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.780735, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.022286, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 131, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 145, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 276, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1657654.016007, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 08:58:50 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 00:49:38 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 00:49:38 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      9473     9757.9  Left-Lateral-Ventricle            25.6864    15.1432     0.0000    83.0000    83.0000 
    82. 

  82.   2   5       392      435.9  Left-Inf-Lat-Vent                 43.9184    14.3858     0.0000    80.0000    80.0000 
    83. 

  83.   3   7     14950    15211.8  Left-Cerebellum-White-Matter      81.7623    13.3702    29.0000   154.0000   125.0000 
    84. 

  84.   4   8     60447    60656.5  Left-Cerebellum-Cortex            54.4305    11.9700     0.0000   149.0000   149.0000 
    85. 

  85.   5  10      8744     8440.0  Left-Thalamus-Proper              81.4277    10.5274    32.0000   110.0000    78.0000 
    86. 

  86.   6  11      3980     3871.0  Left-Caudate                      70.0877     8.6974    39.0000   102.0000    63.0000 
    87. 

  87.   7  12      5659     5729.2  Left-Putamen                      75.6851     5.7042    53.0000   104.0000    51.0000 
    88. 

  88.   8  13      2322     2230.6  Left-Pallidum                     90.0577     6.6948    64.0000   120.0000    56.0000 
    89. 

  89.   9  14      1079     1147.3  3rd-Ventricle                     35.6664    13.6114     5.0000    76.0000    71.0000 
    90. 

  90.  10  15      2250     2318.5  4th-Ventricle                     22.3231    14.5546     0.0000    80.0000    80.0000 
    91. 

  91.  11  16     21010    21233.9  Brain-Stem                        76.9600    12.7587    11.0000   156.0000   145.0000 
    92. 

  92.  12  17      4520     4340.6  Left-Hippocampus                  66.0473    10.6108    11.0000   110.0000    99.0000 
    93. 

  93.  13  18      1759     1674.4  Left-Amygdala                     68.2621     8.7036    33.0000    95.0000    62.0000 
    94. 

  94.  14  24      1142     1155.4  CSF                               41.3424    14.0738     8.0000    86.0000    78.0000 
    95. 

  95.  15  26       496      483.3  Left-Accumbens-area               70.0040     6.4845    35.0000    86.0000    51.0000 
    96. 

  96.  16  28      4111     3798.7  Left-VentralDC                    83.6826    12.8742    21.0000   128.0000   107.0000 
    97. 

  97.  17  30         2        7.6  Left-vessel                       53.0000     1.4142    52.0000    54.0000     2.0000 
    98. 

  98.  18  31       697      650.4  Left-choroid-plexus               49.3802    11.9795     0.0000    79.0000    79.0000 
    99. 

  99.  19  43      5439     5778.8  Right-Lateral-Ventricle           27.2899    16.0819     0.0000    89.0000    89.0000 
    100. 

  100.  20  44       415      452.6  Right-Inf-Lat-Vent                37.8940    17.8930     0.0000    74.0000    74.0000 
    101. 

  101.  21  46     14825    15434.9  Right-Cerebellum-White-Matter     84.9220     9.8166    28.0000   139.0000   111.0000 
    102. 

  102.  22  47     64862    64612.6  Right-Cerebellum-Cortex           59.3726    12.2180     0.0000   153.0000   153.0000 
    103. 

  103.  23  49      8906     8596.4  Right-Thalamus-Proper             82.7205     9.8744    22.0000   111.0000    89.0000 
    104. 

  104.  24  50      3862     3707.7  Right-Caudate                     69.3307     8.9469    30.0000    94.0000    64.0000 
    105. 

  105.  25  51      5464     5496.8  Right-Putamen                     73.8712     6.4894    50.0000    93.0000    43.0000 
    106. 

  106.  26  52      2063     1933.2  Right-Pallidum                    88.3122     5.9671    58.0000   114.0000    56.0000 
    107. 

  107.  27  53      4689     4609.2  Right-Hippocampus                 65.1781     9.7231    22.0000   108.0000    86.0000 
    108. 

  108.  28  54      1926     1870.1  Right-Amygdala                    64.8287     8.9735    26.0000    97.0000    71.0000 
    109. 

  109.  29  58       588      561.1  Right-Accumbens-area              67.6003     5.8991    46.0000    84.0000    38.0000 
    110. 

  110.  30  60      4364     4146.7  Right-VentralDC                   87.5410    13.0241    24.0000   120.0000    96.0000 
    111. 

  111.  31  62         6       11.4  Right-vessel                      57.6667     3.7771    52.0000    61.0000     9.0000 
    112. 

  112.  32  63       651      603.5  Right-choroid-plexus              50.2734    12.1388    22.0000    78.0000    56.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1197     1049.8  WM-hypointensities                69.6892    11.3587    17.0000   104.0000    87.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       177      181.1  Optic-Chiasm                      83.2712    20.1952    27.0000   129.0000   102.0000 
    121. 

  121.  41 251      1159     1118.7  CC_Posterior                     105.5919    18.4835    39.0000   128.0000    89.0000 
    122. 

  122.  42 252       725      633.5  CC_Mid_Posterior                  93.2648    19.3882    37.0000   122.0000    85.0000 
    123. 

  123.  43 253       676      615.6  CC_Central                       100.9615    19.4257    38.0000   133.0000    95.0000 
    124. 

  124.  44 254       759      665.9  CC_Mid_Anterior                  102.5731    22.4205    29.0000   144.0000   115.0000 
    125. 

  125.  45 255      1168     1074.0  CC_Anterior                      109.8108    26.0943    19.0000   169.0000   150.0000 
    126.