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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050406
- # sysname Linux
- # hostname tars-106
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050406
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1294188.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1272650.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1271641.086210, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 17067.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 279771.247317, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 282853.385783, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 562624.633101, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 241929.572184, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 248104.880925, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 490034.453109, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63411.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 751823.633101, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1136004.086210, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1118937.086210, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1116939.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1694596.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.780735, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.022286, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 131, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 145, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 276, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1657654.016007, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 08:58:50
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/08 00:49:38
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/08 00:49:38
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 9473 9757.9 Left-Lateral-Ventricle 25.6864 15.1432 0.0000 83.0000 83.0000
- 2 5 392 435.9 Left-Inf-Lat-Vent 43.9184 14.3858 0.0000 80.0000 80.0000
- 3 7 14950 15211.8 Left-Cerebellum-White-Matter 81.7623 13.3702 29.0000 154.0000 125.0000
- 4 8 60447 60656.5 Left-Cerebellum-Cortex 54.4305 11.9700 0.0000 149.0000 149.0000
- 5 10 8744 8440.0 Left-Thalamus-Proper 81.4277 10.5274 32.0000 110.0000 78.0000
- 6 11 3980 3871.0 Left-Caudate 70.0877 8.6974 39.0000 102.0000 63.0000
- 7 12 5659 5729.2 Left-Putamen 75.6851 5.7042 53.0000 104.0000 51.0000
- 8 13 2322 2230.6 Left-Pallidum 90.0577 6.6948 64.0000 120.0000 56.0000
- 9 14 1079 1147.3 3rd-Ventricle 35.6664 13.6114 5.0000 76.0000 71.0000
- 10 15 2250 2318.5 4th-Ventricle 22.3231 14.5546 0.0000 80.0000 80.0000
- 11 16 21010 21233.9 Brain-Stem 76.9600 12.7587 11.0000 156.0000 145.0000
- 12 17 4520 4340.6 Left-Hippocampus 66.0473 10.6108 11.0000 110.0000 99.0000
- 13 18 1759 1674.4 Left-Amygdala 68.2621 8.7036 33.0000 95.0000 62.0000
- 14 24 1142 1155.4 CSF 41.3424 14.0738 8.0000 86.0000 78.0000
- 15 26 496 483.3 Left-Accumbens-area 70.0040 6.4845 35.0000 86.0000 51.0000
- 16 28 4111 3798.7 Left-VentralDC 83.6826 12.8742 21.0000 128.0000 107.0000
- 17 30 2 7.6 Left-vessel 53.0000 1.4142 52.0000 54.0000 2.0000
- 18 31 697 650.4 Left-choroid-plexus 49.3802 11.9795 0.0000 79.0000 79.0000
- 19 43 5439 5778.8 Right-Lateral-Ventricle 27.2899 16.0819 0.0000 89.0000 89.0000
- 20 44 415 452.6 Right-Inf-Lat-Vent 37.8940 17.8930 0.0000 74.0000 74.0000
- 21 46 14825 15434.9 Right-Cerebellum-White-Matter 84.9220 9.8166 28.0000 139.0000 111.0000
- 22 47 64862 64612.6 Right-Cerebellum-Cortex 59.3726 12.2180 0.0000 153.0000 153.0000
- 23 49 8906 8596.4 Right-Thalamus-Proper 82.7205 9.8744 22.0000 111.0000 89.0000
- 24 50 3862 3707.7 Right-Caudate 69.3307 8.9469 30.0000 94.0000 64.0000
- 25 51 5464 5496.8 Right-Putamen 73.8712 6.4894 50.0000 93.0000 43.0000
- 26 52 2063 1933.2 Right-Pallidum 88.3122 5.9671 58.0000 114.0000 56.0000
- 27 53 4689 4609.2 Right-Hippocampus 65.1781 9.7231 22.0000 108.0000 86.0000
- 28 54 1926 1870.1 Right-Amygdala 64.8287 8.9735 26.0000 97.0000 71.0000
- 29 58 588 561.1 Right-Accumbens-area 67.6003 5.8991 46.0000 84.0000 38.0000
- 30 60 4364 4146.7 Right-VentralDC 87.5410 13.0241 24.0000 120.0000 96.0000
- 31 62 6 11.4 Right-vessel 57.6667 3.7771 52.0000 61.0000 9.0000
- 32 63 651 603.5 Right-choroid-plexus 50.2734 12.1388 22.0000 78.0000 56.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1197 1049.8 WM-hypointensities 69.6892 11.3587 17.0000 104.0000 87.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 177 181.1 Optic-Chiasm 83.2712 20.1952 27.0000 129.0000 102.0000
- 41 251 1159 1118.7 CC_Posterior 105.5919 18.4835 39.0000 128.0000 89.0000
- 42 252 725 633.5 CC_Mid_Posterior 93.2648 19.3882 37.0000 122.0000 85.0000
- 43 253 676 615.6 CC_Central 100.9615 19.4257 38.0000 133.0000 95.0000
- 44 254 759 665.9 CC_Mid_Anterior 102.5731 22.4205 29.0000 144.0000 115.0000
- 45 255 1168 1074.0 CC_Anterior 109.8108 26.0943 19.0000 169.0000 150.0000
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