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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050344 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-611
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050344
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1081102.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1071451.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1071014.589041, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 6871.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 233490.164803, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 233652.941217, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 467143.106019, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 216148.716512, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 215084.766509, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 431233.483022, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 56711.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 616315.106019, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 964651.589041, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 957780.589041, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 955421.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1391568.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.798803, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.028199, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 65, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 81, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 146, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1353403.022165, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 08:22:46 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 00:13:39 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 00:13:39 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      2723     3066.5  Left-Lateral-Ventricle            34.1061    14.9732     0.0000    86.0000    86.0000 
    82. 

  82.   2   5       250      325.9  Left-Inf-Lat-Vent                 44.0960    13.3624     3.0000    78.0000    75.0000 
    83. 

  83.   3   7     11805    12402.7  Left-Cerebellum-White-Matter      82.8962     6.7101    35.0000   106.0000    71.0000 
    84. 

  84.   4   8     44390    44266.0  Left-Cerebellum-Cortex            59.7123    11.6004     0.0000   105.0000   105.0000 
    85. 

  85.   5  10      7551     7175.2  Left-Thalamus-Proper              79.7615     9.1670    36.0000   107.0000    71.0000 
    86. 

  86.   6  11      2793     2748.0  Left-Caudate                      69.5052     7.8069    39.0000    92.0000    53.0000 
    87. 

  87.   7  12      5399     5440.3  Left-Putamen                      74.8683     6.1244    44.0000    94.0000    50.0000 
    88. 

  88.   8  13      1723     1597.2  Left-Pallidum                     89.7591     5.8270    73.0000   106.0000    33.0000 
    89. 

  89.   9  14       460      579.2  3rd-Ventricle                     42.5413    10.6065     9.0000    64.0000    55.0000 
    90. 

  90.  10  15      1700     1731.9  4th-Ventricle                     22.1576    14.2341     0.0000    72.0000    72.0000 
    91. 

  91.  11  16     18709    18890.9  Brain-Stem                        81.8590    10.5332    14.0000   117.0000   103.0000 
    92. 

  92.  12  17      4008     3901.1  Left-Hippocampus                  64.4369     7.5911    30.0000    89.0000    59.0000 
    93. 

  93.  13  18      1370     1371.1  Left-Amygdala                     67.7737     6.3054    34.0000    91.0000    57.0000 
    94. 

  94.  14  24       620      686.4  CSF                               46.2532    11.0649    16.0000    74.0000    58.0000 
    95. 

  95.  15  26       502      492.7  Left-Accumbens-area               62.7769     6.6105    39.0000    85.0000    46.0000 
    96. 

  96.  16  28      4816     4588.1  Left-VentralDC                    85.5475    11.0620    25.0000   122.0000    97.0000 
    97. 

  97.  17  30        38       50.8  Left-vessel                       49.6842     9.0198    29.0000    62.0000    33.0000 
    98. 

  98.  18  31       366      336.5  Left-choroid-plexus               54.3934    11.9050    25.0000    89.0000    64.0000 
    99. 

  99.  19  43      2707     2990.9  Right-Lateral-Ventricle           36.1433    15.3267     5.0000    88.0000    83.0000 
    100. 

  100.  20  44       379      416.8  Right-Inf-Lat-Vent                39.1003    12.9890    13.0000    74.0000    61.0000 
    101. 

  101.  21  46     11613    12067.5  Right-Cerebellum-White-Matter     81.2716     6.2532    38.0000   107.0000    69.0000 
    102. 

  102.  22  47     46693    46935.1  Right-Cerebellum-Cortex           59.0278    10.9380     0.0000   112.0000   112.0000 
    103. 

  103.  23  49      7817     7420.3  Right-Thalamus-Proper             79.2094     8.9905    35.0000   103.0000    68.0000 
    104. 

  104.  24  50      2926     2846.1  Right-Caudate                     70.4956     7.9053    36.0000    91.0000    55.0000 
    105. 

  105.  25  51      5204     5225.3  Right-Putamen                     75.6291     5.8604    44.0000    99.0000    55.0000 
    106. 

  106.  26  52      1697     1568.0  Right-Pallidum                    89.2893     5.2363    69.0000   103.0000    34.0000 
    107. 

  107.  27  53      4317     4185.4  Right-Hippocampus                 64.5562     8.1527    28.0000    96.0000    68.0000 
    108. 

  108.  28  54      1573     1536.0  Right-Amygdala                    67.7266     7.7711    25.0000    92.0000    67.0000 
    109. 

  109.  29  58       502      457.5  Right-Accumbens-area              67.3486     6.9710    46.0000    89.0000    43.0000 
    110. 

  110.  30  60      4574     4411.7  Right-VentralDC                   85.4281    10.6819    24.0000   122.0000    98.0000 
    111. 

  111.  31  62        10       21.7  Right-vessel                      58.7000     4.8086    51.0000    66.0000    15.0000 
    112. 

  112.  32  63       446      397.2  Right-choroid-plexus              52.5785    11.8838    25.0000    77.0000    52.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       954      807.5  WM-hypointensities                69.4403    10.6828    34.0000   101.0000    67.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       155      143.7  Optic-Chiasm                      80.6839    21.3233    28.0000   133.0000   105.0000 
    121. 

  121.  41 251      1076      998.5  CC_Posterior                      96.9182    12.4079    44.0000   114.0000    70.0000 
    122. 

  122.  42 252       625      567.9  CC_Mid_Posterior                  92.1648    15.0621    34.0000   112.0000    78.0000 
    123. 

  123.  43 253       849      802.1  CC_Central                        90.1201    14.0679    25.0000   111.0000    86.0000 
    124. 

  124.  44 254       673      595.8  CC_Mid_Anterior                   90.5052    16.7528    44.0000   114.0000    70.0000 
    125. 

  125.  45 255       782      748.7  CC_Anterior                       96.2941    12.2577    37.0000   113.0000    76.0000 
    126.