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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050344
- # sysname Linux
- # hostname tars-611
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050344
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1081102.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1071451.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1071014.589041, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 6871.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 233490.164803, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 233652.941217, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 467143.106019, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 216148.716512, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 215084.766509, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 431233.483022, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 56711.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 616315.106019, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 964651.589041, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 957780.589041, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 955421.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1391568.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.798803, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.028199, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 65, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 81, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 146, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1353403.022165, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 08:22:46
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/08 00:13:39
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/08 00:13:39
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 2723 3066.5 Left-Lateral-Ventricle 34.1061 14.9732 0.0000 86.0000 86.0000
- 2 5 250 325.9 Left-Inf-Lat-Vent 44.0960 13.3624 3.0000 78.0000 75.0000
- 3 7 11805 12402.7 Left-Cerebellum-White-Matter 82.8962 6.7101 35.0000 106.0000 71.0000
- 4 8 44390 44266.0 Left-Cerebellum-Cortex 59.7123 11.6004 0.0000 105.0000 105.0000
- 5 10 7551 7175.2 Left-Thalamus-Proper 79.7615 9.1670 36.0000 107.0000 71.0000
- 6 11 2793 2748.0 Left-Caudate 69.5052 7.8069 39.0000 92.0000 53.0000
- 7 12 5399 5440.3 Left-Putamen 74.8683 6.1244 44.0000 94.0000 50.0000
- 8 13 1723 1597.2 Left-Pallidum 89.7591 5.8270 73.0000 106.0000 33.0000
- 9 14 460 579.2 3rd-Ventricle 42.5413 10.6065 9.0000 64.0000 55.0000
- 10 15 1700 1731.9 4th-Ventricle 22.1576 14.2341 0.0000 72.0000 72.0000
- 11 16 18709 18890.9 Brain-Stem 81.8590 10.5332 14.0000 117.0000 103.0000
- 12 17 4008 3901.1 Left-Hippocampus 64.4369 7.5911 30.0000 89.0000 59.0000
- 13 18 1370 1371.1 Left-Amygdala 67.7737 6.3054 34.0000 91.0000 57.0000
- 14 24 620 686.4 CSF 46.2532 11.0649 16.0000 74.0000 58.0000
- 15 26 502 492.7 Left-Accumbens-area 62.7769 6.6105 39.0000 85.0000 46.0000
- 16 28 4816 4588.1 Left-VentralDC 85.5475 11.0620 25.0000 122.0000 97.0000
- 17 30 38 50.8 Left-vessel 49.6842 9.0198 29.0000 62.0000 33.0000
- 18 31 366 336.5 Left-choroid-plexus 54.3934 11.9050 25.0000 89.0000 64.0000
- 19 43 2707 2990.9 Right-Lateral-Ventricle 36.1433 15.3267 5.0000 88.0000 83.0000
- 20 44 379 416.8 Right-Inf-Lat-Vent 39.1003 12.9890 13.0000 74.0000 61.0000
- 21 46 11613 12067.5 Right-Cerebellum-White-Matter 81.2716 6.2532 38.0000 107.0000 69.0000
- 22 47 46693 46935.1 Right-Cerebellum-Cortex 59.0278 10.9380 0.0000 112.0000 112.0000
- 23 49 7817 7420.3 Right-Thalamus-Proper 79.2094 8.9905 35.0000 103.0000 68.0000
- 24 50 2926 2846.1 Right-Caudate 70.4956 7.9053 36.0000 91.0000 55.0000
- 25 51 5204 5225.3 Right-Putamen 75.6291 5.8604 44.0000 99.0000 55.0000
- 26 52 1697 1568.0 Right-Pallidum 89.2893 5.2363 69.0000 103.0000 34.0000
- 27 53 4317 4185.4 Right-Hippocampus 64.5562 8.1527 28.0000 96.0000 68.0000
- 28 54 1573 1536.0 Right-Amygdala 67.7266 7.7711 25.0000 92.0000 67.0000
- 29 58 502 457.5 Right-Accumbens-area 67.3486 6.9710 46.0000 89.0000 43.0000
- 30 60 4574 4411.7 Right-VentralDC 85.4281 10.6819 24.0000 122.0000 98.0000
- 31 62 10 21.7 Right-vessel 58.7000 4.8086 51.0000 66.0000 15.0000
- 32 63 446 397.2 Right-choroid-plexus 52.5785 11.8838 25.0000 77.0000 52.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 954 807.5 WM-hypointensities 69.4403 10.6828 34.0000 101.0000 67.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 155 143.7 Optic-Chiasm 80.6839 21.3233 28.0000 133.0000 105.0000
- 41 251 1076 998.5 CC_Posterior 96.9182 12.4079 44.0000 114.0000 70.0000
- 42 252 625 567.9 CC_Mid_Posterior 92.1648 15.0621 34.0000 112.0000 78.0000
- 43 253 849 802.1 CC_Central 90.1201 14.0679 25.0000 111.0000 86.0000
- 44 254 673 595.8 CC_Mid_Anterior 90.5052 16.7528 44.0000 114.0000 70.0000
- 45 255 782 748.7 CC_Anterior 96.2941 12.2577 37.0000 113.0000 76.0000
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