| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125 |
- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050248
- # sysname Linux
- # hostname tars-944
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050248
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1277322.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1262679.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1263145.118182, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 11008.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 302001.508043, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 304294.771750, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 606296.279793, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 209450.282788, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 210787.555601, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 420237.838388, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64569.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 812775.279793, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1105152.118182, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1094144.118182, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1090582.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1684256.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.807080, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.064202, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 43, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 45, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 88, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1582646.444761, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 04:48:28
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 20:12:47
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 20:12:47
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5713 5992.9 Left-Lateral-Ventricle 32.2183 13.7679 3.0000 82.0000 79.0000
- 2 5 180 204.5 Left-Inf-Lat-Vent 43.3333 14.9663 9.0000 85.0000 76.0000
- 3 7 15456 15777.9 Left-Cerebellum-White-Matter 84.3209 7.0152 24.0000 106.0000 82.0000
- 4 8 70300 70667.0 Left-Cerebellum-Cortex 62.7488 9.7911 9.0000 96.0000 87.0000
- 5 10 8349 8040.5 Left-Thalamus-Proper 87.1504 9.1506 32.0000 109.0000 77.0000
- 6 11 4425 4500.5 Left-Caudate 79.8310 6.4283 48.0000 104.0000 56.0000
- 7 12 5814 5854.1 Left-Putamen 84.1601 5.7677 50.0000 108.0000 58.0000
- 8 13 2080 2039.4 Left-Pallidum 95.1260 4.4850 59.0000 108.0000 49.0000
- 9 14 629 684.3 3rd-Ventricle 46.1971 15.1003 12.0000 82.0000 70.0000
- 10 15 2109 2215.7 4th-Ventricle 30.2817 10.9099 3.0000 77.0000 74.0000
- 11 16 22643 22259.4 Brain-Stem 85.0525 10.3627 4.0000 135.0000 131.0000
- 12 17 4455 4335.7 Left-Hippocampus 69.4417 7.1635 27.0000 101.0000 74.0000
- 13 18 2114 2069.7 Left-Amygdala 70.5762 5.8811 48.0000 99.0000 51.0000
- 14 24 897 897.9 CSF 50.4771 13.9960 18.0000 94.0000 76.0000
- 15 26 710 710.5 Left-Accumbens-area 77.9901 4.9836 50.0000 93.0000 43.0000
- 16 28 4411 4237.6 Left-VentralDC 91.1394 9.8123 37.0000 122.0000 85.0000
- 17 30 4 7.4 Left-vessel 63.5000 2.6458 60.0000 66.0000 6.0000
- 18 31 494 444.5 Left-choroid-plexus 52.0344 13.0106 20.0000 87.0000 67.0000
- 19 43 3966 4208.4 Right-Lateral-Ventricle 38.2708 15.9607 8.0000 105.0000 97.0000
- 20 44 319 349.7 Right-Inf-Lat-Vent 40.8464 12.9927 15.0000 76.0000 61.0000
- 21 46 14666 14978.5 Right-Cerebellum-White-Matter 85.7838 6.4558 30.0000 104.0000 74.0000
- 22 47 70195 70506.1 Right-Cerebellum-Cortex 63.8587 9.9622 2.0000 96.0000 94.0000
- 23 49 7977 7706.2 Right-Thalamus-Proper 87.7594 8.7300 28.0000 108.0000 80.0000
- 24 50 4683 4660.0 Right-Caudate 79.1915 6.2637 49.0000 102.0000 53.0000
- 25 51 5850 5871.2 Right-Putamen 83.8766 5.4731 47.0000 105.0000 58.0000
- 26 52 2137 2072.5 Right-Pallidum 95.5288 4.2241 73.0000 111.0000 38.0000
- 27 53 4430 4327.7 Right-Hippocampus 69.7456 7.7920 28.0000 109.0000 81.0000
- 28 54 2070 2018.6 Right-Amygdala 69.8507 5.8394 40.0000 88.0000 48.0000
- 29 58 692 710.2 Right-Accumbens-area 78.6460 4.9943 59.0000 121.0000 62.0000
- 30 60 4430 4153.1 Right-VentralDC 89.5467 10.6214 35.0000 120.0000 85.0000
- 31 62 6 13.9 Right-vessel 59.6667 5.7850 51.0000 68.0000 17.0000
- 32 63 336 308.8 Right-choroid-plexus 52.8006 13.8871 22.0000 82.0000 60.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 631 612.0 WM-hypointensities 71.0238 10.1077 21.0000 99.0000 78.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 87 76.4 Optic-Chiasm 74.2874 20.1315 22.0000 110.0000 88.0000
- 41 251 927 854.6 CC_Posterior 98.6106 16.6045 33.0000 122.0000 89.0000
- 42 252 592 540.9 CC_Mid_Posterior 92.5253 19.8139 20.0000 130.0000 110.0000
- 43 253 744 673.4 CC_Central 93.4933 16.5153 35.0000 117.0000 82.0000
- 44 254 823 687.7 CC_Mid_Anterior 91.0522 18.1389 18.0000 115.0000 97.0000
- 45 255 976 908.2 CC_Anterior 99.9979 19.4823 6.0000 138.0000 132.0000
|
