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ABIDE_fs-6.0.0
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0050248
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050248 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-944
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050248
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1277322.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1262679.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1263145.118182, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 11008.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 302001.508043, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 304294.771750, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 606296.279793, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 209450.282788, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 210787.555601, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 420237.838388, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64569.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 812775.279793, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1105152.118182, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1094144.118182, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1090582.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1684256.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.807080, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.064202, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 43, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 45, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 88, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1582646.444761, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 04:48:28 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 20:12:47 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 20:12:47 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      5713     5992.9  Left-Lateral-Ventricle            32.2183    13.7679     3.0000    82.0000    79.0000 
    82. 

  82.   2   5       180      204.5  Left-Inf-Lat-Vent                 43.3333    14.9663     9.0000    85.0000    76.0000 
    83. 

  83.   3   7     15456    15777.9  Left-Cerebellum-White-Matter      84.3209     7.0152    24.0000   106.0000    82.0000 
    84. 

  84.   4   8     70300    70667.0  Left-Cerebellum-Cortex            62.7488     9.7911     9.0000    96.0000    87.0000 
    85. 

  85.   5  10      8349     8040.5  Left-Thalamus-Proper              87.1504     9.1506    32.0000   109.0000    77.0000 
    86. 

  86.   6  11      4425     4500.5  Left-Caudate                      79.8310     6.4283    48.0000   104.0000    56.0000 
    87. 

  87.   7  12      5814     5854.1  Left-Putamen                      84.1601     5.7677    50.0000   108.0000    58.0000 
    88. 

  88.   8  13      2080     2039.4  Left-Pallidum                     95.1260     4.4850    59.0000   108.0000    49.0000 
    89. 

  89.   9  14       629      684.3  3rd-Ventricle                     46.1971    15.1003    12.0000    82.0000    70.0000 
    90. 

  90.  10  15      2109     2215.7  4th-Ventricle                     30.2817    10.9099     3.0000    77.0000    74.0000 
    91. 

  91.  11  16     22643    22259.4  Brain-Stem                        85.0525    10.3627     4.0000   135.0000   131.0000 
    92. 

  92.  12  17      4455     4335.7  Left-Hippocampus                  69.4417     7.1635    27.0000   101.0000    74.0000 
    93. 

  93.  13  18      2114     2069.7  Left-Amygdala                     70.5762     5.8811    48.0000    99.0000    51.0000 
    94. 

  94.  14  24       897      897.9  CSF                               50.4771    13.9960    18.0000    94.0000    76.0000 
    95. 

  95.  15  26       710      710.5  Left-Accumbens-area               77.9901     4.9836    50.0000    93.0000    43.0000 
    96. 

  96.  16  28      4411     4237.6  Left-VentralDC                    91.1394     9.8123    37.0000   122.0000    85.0000 
    97. 

  97.  17  30         4        7.4  Left-vessel                       63.5000     2.6458    60.0000    66.0000     6.0000 
    98. 

  98.  18  31       494      444.5  Left-choroid-plexus               52.0344    13.0106    20.0000    87.0000    67.0000 
    99. 

  99.  19  43      3966     4208.4  Right-Lateral-Ventricle           38.2708    15.9607     8.0000   105.0000    97.0000 
    100. 

  100.  20  44       319      349.7  Right-Inf-Lat-Vent                40.8464    12.9927    15.0000    76.0000    61.0000 
    101. 

  101.  21  46     14666    14978.5  Right-Cerebellum-White-Matter     85.7838     6.4558    30.0000   104.0000    74.0000 
    102. 

  102.  22  47     70195    70506.1  Right-Cerebellum-Cortex           63.8587     9.9622     2.0000    96.0000    94.0000 
    103. 

  103.  23  49      7977     7706.2  Right-Thalamus-Proper             87.7594     8.7300    28.0000   108.0000    80.0000 
    104. 

  104.  24  50      4683     4660.0  Right-Caudate                     79.1915     6.2637    49.0000   102.0000    53.0000 
    105. 

  105.  25  51      5850     5871.2  Right-Putamen                     83.8766     5.4731    47.0000   105.0000    58.0000 
    106. 

  106.  26  52      2137     2072.5  Right-Pallidum                    95.5288     4.2241    73.0000   111.0000    38.0000 
    107. 

  107.  27  53      4430     4327.7  Right-Hippocampus                 69.7456     7.7920    28.0000   109.0000    81.0000 
    108. 

  108.  28  54      2070     2018.6  Right-Amygdala                    69.8507     5.8394    40.0000    88.0000    48.0000 
    109. 

  109.  29  58       692      710.2  Right-Accumbens-area              78.6460     4.9943    59.0000   121.0000    62.0000 
    110. 

  110.  30  60      4430     4153.1  Right-VentralDC                   89.5467    10.6214    35.0000   120.0000    85.0000 
    111. 

  111.  31  62         6       13.9  Right-vessel                      59.6667     5.7850    51.0000    68.0000    17.0000 
    112. 

  112.  32  63       336      308.8  Right-choroid-plexus              52.8006    13.8871    22.0000    82.0000    60.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       631      612.0  WM-hypointensities                71.0238    10.1077    21.0000    99.0000    78.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85        87       76.4  Optic-Chiasm                      74.2874    20.1315    22.0000   110.0000    88.0000 
    121. 

  121.  41 251       927      854.6  CC_Posterior                      98.6106    16.6045    33.0000   122.0000    89.0000 
    122. 

  122.  42 252       592      540.9  CC_Mid_Posterior                  92.5253    19.8139    20.0000   130.0000   110.0000 
    123. 

  123.  43 253       744      673.4  CC_Central                        93.4933    16.5153    35.0000   117.0000    82.0000 
    124. 

  124.  44 254       823      687.7  CC_Mid_Anterior                   91.0522    18.1389    18.0000   115.0000    97.0000 
    125. 

  125.  45 255       976      908.2  CC_Anterior                       99.9979    19.4823     6.0000   138.0000   132.0000 
    126.